Ruth E. Timme
Ruth E. Timme
Research Microbiologist, FDA/CFSAN/ORS
Verified email at fda.hhs.gov - Homepage
Title
Cited by
Cited by
Year
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats
RE Timme, JV Kuehl, JL Boore, RK Jansen
American Journal of Botany 94 (3), 302-312, 2007
2652007
Broad phylogenomic sampling and the sister lineage of land plants
RE Timme, TR Bachvaroff, CF Delwiche
PLoS one 7 (1), e29696, 2012
2572012
Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Clinical Infectious Diseases 63 (3), 380-386, 2016
2452016
Origin of strigolactones in the green lineage
PM Delaux, X Xie, RE Timme, V Puech‐Pages, C Dunand, E Lecompte, ...
New Phytologist 195 (4), 857-871, 2012
2432012
Practical value of food pathogen traceability through building a whole-genome sequencing network and database
MW Allard, E Strain, D Melka, K Bunning, SM Musser, EW Brown, ...
Journal of clinical microbiology 54 (8), 1975-1983, 2016
2312016
Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
C Finet, RE Timme, CF Delwiche, F Marlétaz
Current Biology 20 (24), 2217-2222, 2010
2162010
Phylogenetic networks: modeling, reconstructibility, and accuracy
BME Moret, L Nakhleh, T Warnow, CR Linder, A Tholse, A Padolina, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 1 …, 2004
2132004
Unraveling the evolution of auxin signaling
I De Smet, U Voß, S Lau, M Wilson, N Shao, RE Timme, R Swarup, I Kerr, ...
Plant physiology 155 (1), 209-221, 2011
1742011
On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01. 0004
MW Allard, Y Luo, E Strain, J Pettengill, R Timme, C Wang, C Li, CE Keys, ...
PloS one 8 (1), e55254, 2013
1402013
Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters
RE Timme, JB Pettengill, MW Allard, E Strain, R Barrangou, C Wehnes, ...
Genome biology and evolution 5 (11), 2109-2123, 2013
1212013
High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer
RE Timme, BB Simpson, CR Linder
American journal of botany 94 (11), 1837-1852, 2007
1082007
Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes
RE Timme, CF Delwiche
BMC Plant Biology 10 (1), 1-12, 2010
992010
Genomics of foodborne pathogens for microbial food safety
MW Allard, R Bell, CM Ferreira, N Gonzalez-Escalona, M Hoffmann, ...
Current Opinion in Biotechnology 49, 224-229, 2018
802018
Characterization and evolution of Salmonella CRISPR-Cas systems
N Shariat, RE Timme, JB Pettengill, R Barrangou, EG Dudley
Microbiology 161 (2), 374-386, 2015
772015
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes isolates associated with an outbreak linked to …
Y Chen, Y Luo, H Carleton, R Timme, D Melka, T Muruvanda, C Wang, ...
Applied and environmental microbiology 83 (15), e00633-17, 2017
602017
Listeria monocytogenes in stone fruits linked to a multistate outbreak: enumeration of cells and whole-genome sequencing
Y Chen, LS Burall, Y Luo, R Timme, D Melka, T Muruvanda, J Payne, ...
Applied and environmental microbiology 82 (24), 7030-7040, 2016
542016
Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the …
Y Chen, Y Luo, P Curry, R Timme, D Melka, M Doyle, M Parish, ...
PLoS One 12 (2), e0171389, 2017
532017
Phylogenetic Analysis of Non-O157 Shiga Toxin-Producing Escherichia coli Strains by Whole-Genome Sequencing
W Ju, G Cao, L Rump, E Strain, Y Luo, R Timme, M Allard, S Zhao, ...
Journal of Clinical Microbiology 50 (12), 4123-4127, 2012
512012
Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by Whole …
J Haendiges, R Timme, MW Allard, RA Myers, EW Brown, ...
Name: Frontiers in Microbiology 6, 125, 2015
472015
The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes
EL Stevens, R Timme, EW Brown, MW Allard, E Strain, K Bunning, ...
Frontiers in microbiology 8, 808, 2017
422017
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Articles 1–20