Firat Tiryaki

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Hua XuRobert T. McCluskey Professor, Section of Biomedical Informatics and Data Science, Yale UniversityVerified email at yale.edu
Cui TaoDepartment of AI and Informatics, Mayo ClinicVerified email at mayo.edu
Yang XiangPeng Cheng Laboratory, ChinaVerified email at pcl.ac.cn
Qiang Weithe university of texas health science center at houstonVerified email at uth.tmc.edu
Jingcheng Du, Ph.D.School of Biomedical Informatics, UTHealthVerified email at uth.tmc.edu
Stephen WuAssociate Professor, UTHealthVerified email at uth.tmc.edu
Yaoyun ZhangSelfiie; Alibaba Damo; Melax Technologies; University of TexasVerified email at selfiie.com
Laila RasmyUTHealth McWilliams School of Biomedical InformaticsVerified email at uth.tmc.edu
Yujia ZhouYale UniversityVerified email at yale.edu
Yuqi SiBaylor Scott White HealthVerified email at columbia.edu
Ergin SoysalThe University of Texas Health Science Center at HoustonVerified email at uth.tmc.edu
Trevor CohenUniversity of WashingtonVerified email at uw.edu
Alejandra Gonzalez-BeltranData & Software Engineering Group Leader, Scientific Computing Department, Science andVerified email at stfc.ac.uk
Deevakar RogithAssistant Professor, UTHealth School of Biomedical Informatics, Houston, TXVerified email at uth.tmc.edu
Philippe Rocca-SerraUniversity of OxfordVerified email at oerc.ox.ac.uk
Lucila Ohno-MachadoUniversity of California San DiegoVerified email at ucsd.edu
Todd JohnsonThe University of Texas School of Biomedical Informatics at HoustonVerified email at uth.tmc.edu
Kirk RobertsMcWilliams School of Biomedical Informatics, University of Texas Health Science CenterVerified email at uth.tmc.edu
Yonghui WuAssociate Professor, University of FloridaVerified email at ufl.edu
Xiaoqian JiangMcWilliams School of Biomedical Informatics, UTHealthVerified email at uth.tmc.edu

Firat Tiryaki

Scientific Programmer II, University of Texas Health Science Center

Verified email at uth.tmc.edu


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A study of deep learning approaches for medication and adverse drug event extraction from clinical text Q Wei, Z Ji, Z Li, J Du, J Wang, J Xu, Y Xiang, F Tiryaki, S Wu, Y Zhang, ... Journal of the American Medical Informatics Association 27 (1), 13-21, 2020	92	2020
DataMed–an open source discovery index for finding biomedical datasets X Chen, AE Gururaj, B Ozyurt, R Liu, E Soysal, T Cohen, F Tiryaki, Y Li, ... Journal of the American Medical Informatics Association 25 (3), 300-308, 2018	74	2018
Relation extraction from clinical narratives using pre-trained language models Q Wei, Z Ji, Y Si, J Du, J Wang, F Tiryaki, S Wu, C Tao, K Roberts, H Xu AMIA annual symposium proceedings 2019, 1236, 2019	68	2019
Time-sensitive clinical concept embeddings learned from large electronic health records Y Xiang, J Xu, Y Si, Z Li, L Rasmy, Y Zhou, F Tiryaki, F Li, Y Zhang, Y Wu, ... BMC medical informatics and decision making 19, 139-148, 2019	31	2019
Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies L Rasmy, F Tiryaki, Y Zhou, Y Xiang, C Tao, H Xu, D Zhi Journal of the American Medical Informatics Association 27 (10), 1593-1599, 2020	26	2020
Efficient and Accurate Extracting of Unstructured EHRs on Cancer Therapy Responses for the Development of RECIST Natural Language Processing Tools: Part I, the Corpus Y Li, YH Luo, JA Wampfler, SM Rubinstein, F Tiryaki, K Ashok V, ... JCO Clinical Cancer Informatics 4, 2020	13	2020
Simple Recurrent Neural Networks is all we need for clinical events predictions using EHR data L Rasmy, J Zhu, Z Li, X Hao, HT Tran, Y Zhou, F Tiryaki, Y Xiang, H Xu, ... arXiv preprint arXiv:2110.00998, 2021	11	2021
Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison Y Zhang, F Tiryaki, M Jiang, H Xu BMC medical informatics and decision making 19, 51-58, 2019	9	2019
Parsing clinical text: how good are the state-of-the-art deep learning based parsers? Y Zhang, F Tiryaki, M Jiang, H Xu 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI …, 2018	3	2018
Detecting Anatomical Entities in Clinical Text. J Xu, Y Zhang, J Du, J Wang, F Tiryaki, H Xu AMIA, 2018		2018

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