| Co-evolution of tumor and immune cells during progression of multiple myeloma R Liu, Q Gao, SM Foltz, JS Fowles, L Yao, JT Wang, S Cao, H Sun, ... Nature communications 12 (1), 2559, 2021 | 84 | 2021 |
| Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer D Cui Zhou, RG Jayasinghe, S Chen, JM Herndon, MD Iglesia, P Navale, ... Nature genetics 54 (9), 1390-1405, 2022 | 77 | 2022 |
| Proteogenomic data and resources for pan-cancer analysis Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ... Cancer cell 41 (8), 1397-1406, 2023 | 22 | 2023 |
| Pan-cancer proteogenomics connects oncogenic drivers to functional states Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron, V Stathias, ... Cell 186 (18), 3921-3944. e25, 2023 | 18 | 2023 |
| Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation Y Geffen, S Anand, Y Akiyama, TM Yaron, Y Song, JL Johnson, ... Cell 186 (18), 3945-3967. e26, 2023 | 15 | 2023 |
| Spatial drivers and pre-cancer populations collaborate with the microenvironment in untreated and chemo-resistant pancreatic cancer DC Zhou, RG Jayasinghe, JM Herndon, E Storrs, CK Mo, Y Wu, RS Fulton, ... BioRxiv, 2021.01. 13.426413, 2021 | 13 | 2021 |
| Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin WW Liang, RJH Lu, RG Jayasinghe, SM Foltz, E Porta-Pardo, Y Geffen, ... Cancer cell 41 (9), 1567-1585. e7, 2023 | 7 | 2023 |
| Single-cell discovery and multiomic characterization of therapeutic targets in multiple myeloma L Yao, JT Wang, RG Jayasinghe, J O'Neal, CF Tsai, MP Rettig, Y Song, ... Cancer research 83 (8), 1214-1233, 2023 | 7 | 2023 |
| Pan-cancer proteogenomics characterization of tumor immunity F Petralia, W Ma, TM Yaron, FP Caruso, N Tignor, JM Wang, ... Cell, 2024 | 4 | 2024 |
| High-dimensional deconstruction of pancreatic cancer identifies tumor microenvironmental and developmental stemness features that predict survival EP Storrs, P Chati, A Usmani, I Sloan, BA Krasnick, R Babbra, PK Harris, ... npj Precision Oncology 7 (1), 105, 2023 | 4 | 2023 |
| High-dimensional deconstruction of pancreatic ductal adenocarcinoma identifies tumor microenvironmental communities associated with survival EP Storrs, A Usmani, P Chati, I Sloan, BA Krasnick, R Babbra, PK Harris, ... medRxiv, 2022.04. 29.22274376, 2022 | 3 | 2022 |
| Deep learning integrates histopathology and proteogenomics at a pan-cancer level JM Wang, R Hong, EG Demicco, J Tan, R Lazcano, AL Moreira, Y Li, ... Cell Reports Medicine 4 (9), 2023 | 1 | 2023 |
| Abstract LB004: Deciphering oncogenic dedifferentiation: A proteomic approach to quantifying stemness scores and unveiling druggable targets I Kołodziejczak-Guglas, R Simões, EG Demicco, RL Segura, AJ Lazar, ... Cancer Research 84 (7_Supplement), LB004-LB004, 2024 | | 2024 |
| Mushroom: a tool for identification of 3D cellular neighborhoods in multi-modal spatial datasets E Storrs, S Chen, CK Mo, A Houston, A Shinkle, A Southard-Smith, ... Cancer Research 84 (6_Supplement), 1203-1203, 2024 | | 2024 |
| Morph: A feature extraction toolset for spatial transcriptomics ALNT da Costa, J Liu, CK Mo, E Storrs, AN Southard-Smith, ... Cancer Research 84 (6_Supplement), 2341-2341, 2024 | | 2024 |
| Molecular signatures associated with the progression from DCIS to IDC S Chen, A Karpova, P Lal, E Storrs, R Jayasinghe, M Iglesia, A Houston, ... Cancer Research 84 (6_Supplement), 1157-1157, 2024 | | 2024 |
| Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages MD Iglesia, RG Jayasinghe, S Chen, NV Terekhanova, JM Herndon, ... bioRxiv, 2023.10. 31.565031, 2023 | | 2023 |
| Unsupervised discovery of tumor microenvironmental communities A Chaudhuri, E Storrs US Patent App. 18/298,355, 2023 | | 2023 |
| High-dimensional deconstruction of pancreatic cancer identifies tumor microenvironmental and developmental stemness features that predict survival A Chaudhuri, E Storrs, P Chati, A Usmani, I Sloan, B Krasnick, RK Babbra, ... | | 2023 |
| Abstract LB061: Proteomic-based stemness score measure oncogenic dedifferentiation and enable the identification of druggable targets TM Malta, I Kołodziejczak, R Simões, A Colaprico, E Storrs, F Petralia, ... Cancer Research 83 (8_Supplement), LB061-LB061, 2023 | | 2023 |
