| ASTRID: accurate species trees from internode distances P Vachaspati, T Warnow BMC genomics 16, 1-13, 2015 | 215 | 2015 |
| Optical rotation in excess of 100 rad generated by Rb vapor in a multipass cell S Li, P Vachaspati, D Sheng, N Dural, MV Romalis Physical Review A—Atomic, Molecular, and Optical Physics 84 (6), 061403, 2011 | 164 | 2011 |
| Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer R Davidson, P Vachaspati, S Mirarab, T Warnow BMC genomics 16, 1-12, 2015 | 97 | 2015 |
| Phylogenomics from whole genome sequences using aTRAM JM Allen, B Boyd, NP Nguyen, P Vachaspati, T Warnow, DI Huang, ... Systematic Biology 66 (5), 786-798, 2017 | 80 | 2017 |
| Primates, lice and bacteria: speciation and genome evolution in the symbionts of hominid lice BM Boyd, JM Allen, NP Nguyen, P Vachaspati, ZS Quicksall, T Warnow, ... Molecular Biology and Evolution 34 (7), 1743-1757, 2017 | 59 | 2017 |
| FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization P Vachaspati, T Warnow Bioinformatics 33 (5), 631-639, 2017 | 51 | 2017 |
| SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space P Vachaspati, T Warnow Molecular phylogenetics and evolution 124, 122-136, 2018 | 45 | 2018 |
| OCTAL: Optimal Completion of gene trees in polynomial time S Christensen, EK Molloy, P Vachaspati, T Warnow Algorithms for molecular biology 13, 1-18, 2018 | 20 | 2018 |
| SIESTA: enhancing searches for optimal supertrees and species trees P Vachaspati, T Warnow BMC genomics 19, 41-57, 2018 | 10 | 2018 |
| Optimal completion of incomplete gene trees in polynomial time using OCTAL S Christensen, EK Molloy, P Vachaspati, T Warnow 17th International Workshop on Algorithms in Bioinformatics (WABI 2017), 2017 | 8 | 2017 |
| Quantum dots: Theory, application, synthesis P Vachaspati Massachusetts Institute of Technology 2, 1-6, 2013 | 8 | 2013 |
| Non-parametric correction of estimated gene trees using TRACTION S Christensen, EK Molloy, P Vachaspati, A Yammanuru, T Warnow Algorithms for Molecular Biology 15, 1-18, 2020 | 6 | 2020 |
| TRACTION: fast non-parametric improvement of estimated gene trees S Christensen, EK Molloy, P Vachaspati, T Warnow 19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019 | 6 | 2019 |
| 17th International Workshop on Algorithms in Bioinformatics (WABI 2017) B Alipanahi, L Salmela, SJ Puglisi, M Muggli, C Boucher, MS Bayzid, ... Schloss Dagstuhl-Leibniz-Zentrum für Informatik GmbH, 2017 | 6 | 2017 |
| Fast evaluation of multi-hadron correlation functions P Vachaspati, W Detmold arXiv preprint arXiv:1411.3691, 2014 | 4 | 2014 |
| Large scale phylogenomic estimation P Vachaspati University of Illinois at Urbana-Champaign, 2019 | 2 | 2019 |
| Enhancing searches for optimal trees using SIESTA P Vachaspati, T Warnow Comparative Genomics: 15th International Workshop, RECOMB CG 2017, Barcelona …, 2017 | 1 | 2017 |
| Electron transport in the presence of magnetic fields P Vachaspati Tech. rep. https://pranjalv. com/halleffect. pdf. Massachusetts Institute of …, 2013 | 1 | 2013 |
| Doppler-Free Spetroscopy of Rubidium P Vachaspati, S Pasterski | 1 | 2013 |
| A computer vision system for 9-ball pool P Vachaspati Technical Report Massachusetts Institute of Technology, 2012 | 1 | 2012 |
