Rohit Singh
Rohit Singh
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Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
IsoRankN: spectral methods for global alignment of multiple protein networks
CS Liao, K Lu, M Baym, R Singh, B Berger
Bioinformatics 25 (12), i253-i258, 2009
Pairwise global alignment of protein interaction networks by matching neighborhood topology
R Singh, J Xu, B Berger
Annual international conference on research in computational molecular …, 2007
IsoBase: a database of functionally related proteins across PPI networks
D Park, R Singh, M Baym, CS Liao, B Berger
Nucleic acids research 39 (suppl_1), D295-D300, 2010
Struct2Net: a web service to predict protein–protein interactions using a structure-based approach
R Singh, D Park, J Xu, R Hosur, B Berger
Nucleic acids research 38 (suppl_2), W508-W515, 2010
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal–regulated kinase signaling
AA Friedman, G Tucker, R Singh, D Yan, A Vinayagam, Y Hu, R Binari, ...
Science signaling 4 (196), rs10-rs10, 2011
Classification of music signals in the visual domain
H Deshpande, R Singh, U Nam
Proceedings of the COST-G6 conference on digital audio effects 1 (3), 1-4, 2001
Global alignment of multiple protein interaction networks
R Singh, J Xu, B Berger
Biocomputing 2008, 303-314, 2008
Struct2net: integrating structure into protein-protein interaction prediction
R Singh, J Xu, B Berger
Biocomputing 2006, 403-414, 2006
RNAiCut: automated detection of significant genes from functional genomic screens
IM Kaplow, R Singh, A Friedman, C Bakal, N Perrimon, B Berger
Nature methods 6 (7), 476-477, 2009
Predicting and annotating catalytic residues: an information theoretic approach
B Sterner, R Singh, B Berger
Journal of Computational Biology 14 (8), 1058-1073, 2007
Active learning for sampling in time-series experiments with application to gene expression analysis
R Singh, N Palmer, D Gifford, B Berger, Z Bar-Joseph
Proceedings of the 22nd international conference on Machine learning, 832-839, 2005
Identifying structural motifs in proteins
R Singh, M Saha
Biocomputing 2003, 228-239, 2002
ChainTweak: sampling from the neighbourhood of a protein conformation
R Singh, B Berger
Biocomputing 2005, 52-63, 2005
Method for identifying network similarity by matching neighborhood topology
BB Leighton, R Singh
US Patent 8,000,262, 2011
Probabilistic modeling of systematic errors in two-hybrid experiments
D Sontag, R Singh, B Berger
Biocomputing 2007, 445-457, 2007
Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities
R Singh, BL Hie, A Narayan, B Berger
Genome Biology 22 (1), 1-24, 2021
Mugec: Automatic music genre classification
H Deshpande, U Nam, R Singh
Technical Report, Stanford University, 2001
D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions
S Sledzieski, R Singh, L Cowen, B Berger
Cell Systems 12 (10), 969-982. e6, 2021
Algorithms for the analysis of protein interaction networks
R Singh
Massachusetts Institute of Technology, 2012
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