Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus W Martin, T Rujan, E Richly, A Hansen, S Cornelsen, T Lins, D Leister, ... Proceedings of the National Academy of Sciences 99 (19), 12246-12251, 2002 | 1448 | 2002 |
Recovering evolutionary trees under a more realistic model of sequence evolution. PJ Lockhart, MA Steel, MD Hendy, D Penny Molecular biology and evolution 11 (4), 605-612, 1994 | 1148 | 1994 |
A framework for the quantitative study of evolutionary trees MD Hendy, D Penny Systematic zoology 38 (4), 297-309, 1989 | 986 | 1989 |
The modern molecular clock L Bromham, D Penny Nature Reviews Genetics 4 (3), 216-224, 2003 | 775 | 2003 |
Branch and bound algorithms to determine minimal evolutionary trees MD Hendy, D Penny Mathematical biosciences 59 (2), 277-290, 1982 | 750 | 1982 |
Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence A Cooper, D Penny Science 275 (5303), 1109-1113, 1997 | 558 | 1997 |
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria E Lerat, V Daubin, NA Moran PLoS biology 1 (1), e19, 2003 | 525 | 2003 |
Genome-scale phylogeny and the detection of systematic biases MJ Phillips, F Delsuc, D Penny Molecular biology and evolution 21 (7), 1455-1458, 2004 | 485 | 2004 |
Distributions of tree comparison metrics—some new results MA Steel, D Penny Systematic biology 42 (2), 126-141, 1993 | 409 | 1993 |
Parsimony, likelihood, and the role of models in molecular phylogenetics M Steel, D Penny Molecular biology and evolution 17 (6), 839-850, 2000 | 404 | 2000 |
A genome phylogeny for mitochondria among α-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes C Esser, N Ahmadinejad, C Wiegand, C Rotte, F Sebastiani, ... Molecular biology and evolution 21 (9), 1643-1660, 2004 | 401 | 2004 |
The use of tree comparison metrics D Penny, MD Hendy Systematic Zoology 34 (1), 75-82, 1985 | 387 | 1985 |
Modern humans did not admix with Neanderthals during their range expansion into Europe M Currat, L Excoffier PLoS biology 2 (12), e421, 2004 | 358 | 2004 |
The path from the RNA world AM Poole, DC Jeffares, D Penny Journal of Molecular Evolution 46, 1-17, 1998 | 351 | 1998 |
Relics from the RNA world DC Jeffares, AM Poole, D Penny Journal of molecular evolution 46, 18-36, 1998 | 342 | 1998 |
Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution KE Slack, CM Jones, T Ando, GL Harrison, RE Fordyce, U Arnason, ... Molecular biology and evolution 23 (6), 1144-1155, 2006 | 334 | 2006 |
Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. RE Hickson, C Simon, A Cooper, GS Spicer, J Sullivan, D Penny Molecular biology and evolution 13 (1), 150-169, 1996 | 323 | 1996 |
The biology of intron gain and loss DC Jeffares, T Mourier, D Penny TRENDS in Genetics 22 (1), 16-22, 2006 | 318 | 2006 |
The root of the mammalian tree inferred from whole mitochondrial genomes MJ Phillips, D Penny Molecular phylogenetics and evolution 28 (2), 171-185, 2003 | 315 | 2003 |
Testing the theory of evolution by comparing phylogenetic trees constructed from five different protein sequences D Penny, LR Foulds, MD Hendy Nature 297 (5863), 197-200, 1982 | 295 | 1982 |