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Mikhail Shugay
Mikhail Shugay
Genomics of Adaptive Immunity, IBCh/RNRMU/CEITEC
Подтвержден адрес электронной почты в домене ceitec.muni.cz - Главная страница
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Процитировано
Год
MiXCR: software for comprehensive adaptive immunity profiling
DA Bolotin, S Poslavsky, I Mitrophanov, M Shugay, IZ Mamedov, ...
Nature methods 12 (5), 380-381, 2015
14162015
VDJtools: unifying post-analysis of T cell receptor repertoires
M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, ...
PLoS computational biology 11 (11), e1004503, 2015
5472015
Towards error-free profiling of immune repertoires
M Shugay, OV Britanova, EM Merzlyak, MA Turchaninova, IZ Mamedov, ...
Nature methods 11 (6), 653-655, 2014
4522014
Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling
OV Britanova, EV Putintseva, M Shugay, EM Merzlyak, MA Turchaninova, ...
The Journal of Immunology 192 (6), 2689-2698, 2014
4522014
VDJdb: a curated database of T-cell receptor sequences with known antigen specificity
M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ...
Nucleic acids research 46 (D1), D419-D427, 2018
4132018
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ...
Nucleic Acids Research 48 (D1), D1057-D1062, 2020
3112020
Antigen receptor repertoire profiling from RNA-seq data
DA Bolotin, S Poslavsky, AN Davydov, FE Frenkel, L Fanchi, ...
Nature biotechnology 35 (10), 908-911, 2017
2732017
tcR: an R package for T cell receptor repertoire advanced data analysis
VI Nazarov, MV Pogorelyy, EA Komech, IV Zvyagin, DA Bolotin, M Shugay, ...
BMC bioinformatics 16, 1-5, 2015
2422015
SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T cell receptors
AS Shomuradova, MS Vagida, SA Sheetikov, KV Zornikova, D Kiryukhin, ...
Immunity 53 (6), 1245-1257. e5, 2020
2312020
MiTCR: software for T-cell receptor sequencing data analysis
DA Bolotin, M Shugay, IZ Mamedov, EV Putintseva, MA Turchaninova, ...
Nature methods 10 (9), 813-814, 2013
1982013
High-quality full-length immunoglobulin profiling with unique molecular barcoding
MA Turchaninova, A Davydov, OV Britanova, M Shugay, V Bikos, ...
Nature protocols 11 (9), 1599-1616, 2016
1912016
A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance
Y Feng, J van der Veeken, M Shugay, EV Putintseva, HU Osmanbeyoglu, ...
Nature 528 (7580), 132-136, 2015
1672015
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ...
Nature immunology 18 (12), 1274-1278, 2017
1642017
Pairing of T‐cell receptor chains via emulsion PCR
MA Turchaninova, OV Britanova, DA Bolotin, M Shugay, EV Putintseva, ...
European journal of immunology 43 (9), 2507-2515, 2013
1522013
Dynamics of individual T cell repertoires: from cord blood to centenarians
OV Britanova, M Shugay, EM Merzlyak, DB Staroverov, EV Putintseva, ...
The Journal of Immunology 196 (12), 5005-5013, 2016
1502016
Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing
IV Zvyagin, MV Pogorelyy, ME Ivanova, EA Komech, M Shugay, ...
Proceedings of the National Academy of Sciences 111 (16), 5980-5985, 2014
1282014
Detecting T cell receptors involved in immune responses from single repertoire snapshots
MV Pogorelyy, AA Minervina, M Shugay, DM Chudakov, YB Lebedev, ...
PLoS Biology 17 (6), e3000314, 2019
1142019
Quantitative profiling of immune repertoires for minor lymphocyte counts using unique molecular identifiers
ES Egorov, EM Merzlyak, AA Shelenkov, OV Britanova, GV Sharonov, ...
The Journal of Immunology 194 (12), 6155-6163, 2015
1082015
Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions
M Shugay, I Ortiz de Mendíbil, JL Vizmanos, FJ Novo
Bioinformatics 29 (20), 2539-2546, 2013
1072013
The changing landscape of naive T cell receptor repertoire with human aging
ES Egorov, SA Kasatskaya, VN Zubov, M Izraelson, TO Nakonechnaya, ...
Frontiers in Immunology 9, 1618, 2018
972018
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Статьи 1–20