| Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Nature protocols 14 (2), 482-517, 2019 | 1564 | 2019 |
| AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations M Kucera, R Isserlin, A Arkhangorodsky, GD Bader F1000Research 5, 2016 | 320 | 2016 |
| Cytoscape. js 2023 update: a graph theory library for visualization and analysis M Franz, CT Lopes, D Fong, M Kucera, M Cheung, MC Siper, G Huck, ... Bioinformatics 39 (1), btad031, 2023 | 48 | 2023 |
| Surveilling and tracking COVID-19 patients using a portable quantum dot smartphone device Y Zhang, A Malekjahani, BN Udugama, P Kadhiresan, H Chen, ... Nano letters 21 (12), 5209-5216, 2021 | 48 | 2021 |
| The Cytoscape Automation app article collection B Demchak, D Otasek, AR Pico, GD Bader, K Ono, B Settle, E Sage, ... | 23 | 2018 |
| AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations. F1000Res. 2016; 5: 1717 M Kucera, R Isserlin, A Arkhangorodsky, GD Bader | 20 | |
| Partial evaluation of Maple J Carette, M Kucera Proceedings of the 2007 ACM SIGPLAN symposium on Partial evaluation and …, 2007 | 15 | 2007 |
| Pathway enrichment analysis of -omics data J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Biorxiv, 232835, 2017 | 7 | 2017 |
| Partial evaluation and residual theorems in computer algebra M Kucera, J Carette Proceedings of Calculemus, 2006 | 3 | 2006 |
| Partial evaluation of maple programs M Kucera McMaster University, 2006 | 2 | 2006 |
| EnrichmentMap Documentation R Isserlin, M Kucera, C Lopes | | 2018 |
| Representations of Programming Languages CAS706 M Kucera, J Carette | | 2005 |
| Enrichment Map Pipeline-a set of Cytoscape apps to visualize, explore and summarize pathway enrichment results R Isserlin, M Kucera, V Voisin, GD Bader | | |
