| Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ... Nature 545 (7655), 446-451, 2017 | 1571 | 2017 |
| Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... nature 494 (7435), 77-80, 2013 | 1100 | 2013 |
| Allele-specific HLA loss and immune escape in lung cancer evolution N McGranahan, R Rosenthal, CT Hiley, AJ Rowan, TBK Watkins, ... Cell 171 (6), 1259-1271. e11, 2017 | 1066 | 2017 |
| Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011 | 939 | 2011 |
| GOATOOLS: A Python library for Gene Ontology analyses DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ... Scientific reports 8 (1), 10872, 2018 | 688 | 2018 |
| Approximate bayesian computation M Sunnĺker, AG Busetto, E Numminen, J Corander, M Foll, C Dessimoz PLoS computational biology 9 (1), e1002803, 2013 | 658 | 2013 |
| Phylogenetic and functional assessment of orthologs inference projects and methods AM Altenhoff, C Dessimoz PLoS computational biology 5 (1), e1000262, 2009 | 450 | 2009 |
| Structural variant calling: the long and the short of it M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier, C Dessimoz, ... Genome biology 20 (1), 1-14, 2019 | 438 | 2019 |
| Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 14061, 2017 | 436 | 2017 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ... Genome Biology 17, 184, 2016 | 401 | 2016 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 314 | 2019 |
| Base-calling for next-generation sequencing platforms C Ledergerber, C Dessimoz Briefings in bioinformatics 12 (5), 489-497, 2011 | 285 | 2011 |
| Inferring horizontal gene transfer M Ravenhall, N Škunca, F Lassalle, C Dessimoz PLoS computational biology 11 (5), e1004095, 2015 | 260 | 2015 |
| Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS computational biology 8 (5), e1002514, 2012 | 245 | 2012 |
| OMA 2011: orthology inference among 1000 complete genomes AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz Nucleic acids research 39 (suppl_1), D289-D294, 2010 | 245 | 2010 |
| The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015 | 237 | 2015 |
| The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018 | 235 | 2018 |
| Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ... Systematic biology 64 (5), 778-791, 2015 | 224 | 2015 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 221 | 2016 |
| Algorithm of OMA for large-scale orthology inference A Roth, G Gonnet, C Dessimoz BMC Bioinformatics 9 (1), 518, 2008 | 201 | 2008 |
Adrian AltenhoffETH ZurichVerified email at inf.ethz.ch
