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Pavel Avdeyev
Pavel Avdeyev
Postdoctoral Fellow, UT Southwestern Medical Center
Verified email at UTsouthwestern.edu - Homepage
Title
Cited by
Cited by
Year
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
2642022
Reconstruction of ancestral genomes in presence of gene gain and loss
P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev
Journal of Computational Biology 23 (3), 150-164, 2016
762016
Evaluation of haplotype callers for next-generation sequencing of viruses
A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ...
Infection, Genetics and Evolution 82, 104277, 2020
442020
Dirichlet diffusion score model for biological sequence generation
P Avdeyev, C Shi, Y Tan, K Dudnyk, J Zhou
International Conference on Machine Learning, 1276-1301, 2023
292023
Biological computation and computational biology: survey, challenges, and discussion
Z Chelly Dagdia, P Avdeyev, MS Bayzid
Artificial Intelligence Review 54 (6), 4169-4235, 2021
242021
Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
A Zamyatin, P Avdeyev, J Liang, A Sharma, C Chen, V Lukyanchikova, ...
GigaScience 10 (3), giab017, 2021
212021
A unified ILP framework for core ancestral genome reconstruction problems
P Avdeyev, N Alexeev, Y Rong, MA Alekseyev
Bioinformatics 36 (10), 2993-3003, 2020
15*2020
Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes
JP Bernot, P Avdeyev, A Zamyatin, N Dreyer, N Alexeev, M Pérez-Losada, ...
GigaScience 11, giac021, 2022
112022
Comparative genomics meets topology: a novel view on genome median and halving problems
N Alexeev, P Avdeyev, MA Alekseyev
BMC bioinformatics 17, 213-223, 2016
82016
Linearization of Median Genomes Under the Double-Cut-and-Join-Indel Model
P Avdeyev, S Jiang, MA Alekseyev
Evolutionary Bioinformatics 15, 1176934318820534, 2019
62019
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ...
F1000Research 11 (530), 530, 2022
52022
Linearization of Ancestral Genomes with Duplicated Genes
P Avdeyev, MA Alekseyev
Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020
52020
Implicit Transpositions in DCJ Scenarios
P Avdeyev, S Jiang, MA Alekseyev
Frontiers in genetics 8, 212, 2017
32017
Computational approaches for understanding sequence variation effects on the 3D genome architecture
P Avdeyev, J Zhou
Annual review of biomedical data science 5 (1), 183-204, 2022
12022
Orienting Ordered Scaffolds: Complexity and Algorithms
S Aganezov, P Avdeyev, N Alexeev, Y Rong, MA Alekseyev
SN Computer Science 3 (4), 308, 2022
12022
A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems
P Avdeyev, M Atamanova, MA Alekseyev
Algorithms for Computational Biology: 6th International Conference, AlCoB …, 2019
12019
TruEst: a better estimator of evolutionary distance under the INFER model
A Zabelkin, P Avdeyev, N Alexeev
Journal of Mathematical Biology 87 (2), 25, 2023
2023
Mathematical Models of Ancestral Genome Reconstruction
P Avdeev
The George Washington University, 2021
2021
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