Thomas Brettin
Thomas Brettin
Argonne National Laboratory and University of Chicago
Verified email at anl.gov
Title
Cited by
Cited by
Year
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
D Martinez, RM Berka, B Henrissat, M Saloheimo, M Arvas, SE Baker, ...
Nature biotechnology 26 (5), 553-560, 2008
11152008
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
10212015
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
8502017
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ...
Applied and environmental microbiology 75 (7), 2046-2056, 2009
7062009
Genomewide search in Canadian families with inflammatory bowel disease reveals two novel susceptibility loci
JD Rioux, MS Silverberg, MJ Daly, AH Steinhart, RS McLeod, AM Griffiths, ...
The American Journal of Human Genetics 66 (6), 1863-1870, 2000
6012000
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
D Martinez, J Challacombe, I Morgenstern, D Hibbett, M Schmoll, ...
Proceedings of the National Academy of Sciences 106 (6), 1954-1959, 2009
5772009
Mapping of a gene for type 2 diabetes associated with an insulin secretion defect by a genome scan in Finnish families
MM Mahtani, E Widén, M Lehto, J Thomas, M McCarthy, J Brayer, ...
Nature genetics 14 (1), 90-94, 1996
4031996
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
MW Silby, AM Cerdeño-Tárraga, GS Vernikos, SR Giddens, RW Jackson, ...
Genome biology 10 (5), 1-16, 2009
3812009
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
J Chun, CJ Grim, NA Hasan, JH Lee, SY Choi, BJ Haley, E Taviani, ...
Proceedings of the National Academy of Sciences 106 (36), 15442-15447, 2009
3562009
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
3012018
Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis
CS Han, G Xie, JF Challacombe, MR Altherr, SS Bhotika, D Bruce, ...
Journal of bacteriology 188 (9), 3382-3390, 2006
2622006
Characterization of the MODY3 phenotype. Early-onset diabetes caused by an insulin secretion defect.
M Lehto, T Tuomi, MM Mahtani, E Widén, C Forsblom, L Sarelin, ...
The Journal of clinical investigation 99 (4), 582-591, 1997
2581997
The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
E Pierce, G Xie, RD Barabote, E Saunders, CS Han, JC Detter, ...
Environmental microbiology 10 (10), 2550-2573, 2008
2542008
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks
KS Makarova, MV Omelchenko, EK Gaidamakova, VY Matrosova, ...
PloS one 2 (9), e955, 2007
2432007
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii
G Xie, DC Bruce, JF Challacombe, O Chertkov, JC Detter, P Gilna, ...
Applied and environmental microbiology 73 (11), 3536-3546, 2007
2182007
Two loci on chromosomes 2 and X for premature coronary heart disease identified in early-and late-settlement populations of Finland
P Pajukanta, M Cargill, L Viitanen, I Nuotio, A Kareinen, M Perola, ...
The American Journal of Human Genetics 67 (6), 1481-1493, 2000
1992000
The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes
DL Maeder, I Anderson, TS Brettin, DC Bruce, P Gilna, CS Han, A Lapidus, ...
Journal of bacteriology 188 (22), 7922-7931, 2006
1912006
Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus
NE Kimes, CJ Grim, WR Johnson, NA Hasan, BD Tall, MH Kothary, H Kiss, ...
The ISME journal 6 (4), 835-846, 2012
1862012
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
T Pearson, P Giffard, S Beckstrom-Sternberg, R Auerbach, H Hornstra, ...
BMC biology 7 (1), 1-14, 2009
1712009
Whole-genome-based phylogeny and divergence of the genus Brucella
JT Foster, SM Beckstrom-Sternberg, T Pearson, JS Beckstrom-Sternberg, ...
Journal of bacteriology 191 (8), 2864-2870, 2009
1682009
The system can't perform the operation now. Try again later.
Articles 1–20