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Mikhail Ponomarenko
Mikhail Ponomarenko
Novosibirsk State University; Institute of Cytology and Genetics, Novosibirsk, Russia
Verified email at bionet.nsc.ru - Homepage
Title
Cited by
Cited by
Year
Conformational and physicochemical DNA features specific for transcription factor binding sites.
JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, ...
Bioinformatics (Oxford, England) 15 (7), 654-668, 1999
1101999
An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding …
L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ...
PloS one 8 (2), e54626, 2013
852013
TATA box polymorphisms in human gene promoters and associated hereditary pathologies
LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ...
Biochemistry (Moscow) 74, 117-129, 2009
762009
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, ...
Bioinformatics (Oxford, England) 15 (7), 687-703, 1999
761999
rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites
JV Ponomarenko, GV Orlova, TI Merkulova, EV Gorshkova, ON Fokin, ...
Human mutation 20 (4), 239-248, 2002
682002
A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism
PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ...
Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008
582008
Point mutations within 663–666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site
GV Vasiliev, VM Merkulov, VF Kobzev, TI Merkulova, MP Ponomarenko, ...
FEBS letters 462 (1-2), 85-88, 1999
561999
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, ...
Bioinformatics (Oxford, England) 15 (7), 631-643, 1999
541999
The Mechanism by which TATA‐Box Polymorphisms Associated with Human Hereditary Diseases Influence Interactions with the TATA‐Binding Protein
I Drachkova, L Savinkova, T Arshinova, M Ponomarenko, S Peltek, ...
Human Mutation 35 (5), 601-608, 2014
522014
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations
JV Ponomarenko, TI Merkulova, GV Vasiliev, ZB Levashova, GV Orlova, ...
Nucleic Acids Research 29 (1), 312-316, 2001
472001
How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene’s Promoter via a Change in Affinity of the TATA‐Binding …
M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ...
BioMed Research International 2015 (1), 359835, 2015
462015
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites
AE Kel, MP Ponomarenko, EA Likhachev, YL Orlov, IV Ischenko, ...
Bioinformatics 9 (6), 617-627, 1993
451993
Nucleosomal DNA property database.
VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, ...
Bioinformatics (Oxford, England) 15 (7), 582-592, 1999
381999
GenViewer: a computing tool for protein-coding regions prediction in nucleotide sequences
L Milanesi, NA Kolchanov, IB Rogozin, IV Ischenko, AE Kel, YL Orlov, ...
Bioinformatics, Supercomputing and Complex Genome Analysis, 573-587, 1993
381993
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another
JV Ponomarenko, DP Furman, AS Frolov, NL Podkolodny, GV Orlova, ...
Nucleic Acids Research 29 (1), 284-287, 2001
372001
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
JV Ponomarenko, GV Orlova, AS Frolov, MS Gelfand, MP Ponomarenko
Nucleic Acids Research 30 (1), 195-199, 2002
362002
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
VP Valuev, DA Afonnikov, MP Ponomarenko, L Milanesi, NA Kolchanov
Nucleic Acids Research 30 (1), 200-202, 2002
352002
Generating programs for predicting the activity of functional sites
MP Ponomarenko, AN Kolchanova, NA Kolchanov
Journal of Computational Biology 4 (1), 83-90, 1997
351997
Hogness box
M Ponomarenko, V Mironova, K Gunbin, L Savinkova
Brenner’s Encyclopedia of Genetics 3, 491-494, 2013
342013
Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters
OV Arkova, MP Ponomarenko, DA Rasskazov, IA Drachkova, ...
BMC genomics 16, 1-13, 2015
332015
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