Follow
Jana Hozzová (Pazúriková)
Title
Cited by
Cited by
Year
A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit
F Petrovič, D Střelák, J Hozzová, J Olíha, R Trembecký, S Benkner, ...
Future Generation Computer Systems 108, 161-177, 2020
192020
Nonlinear vs. linear biasing in Trp-cage folding simulations
V Spiwok, P Oborský, J Pazúriková, A Křenek, B Králová
The Journal of chemical physics 142 (11), 115101, 2015
142015
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges
T Raček, J Pazúriková, RS Vařeková, S Geidl, A Křenek, FL Falginella, ...
Journal of Cheminformatics 8 (1), 57, 2016
92016
Using hardware performance counters to speed up autotuning convergence on GPUs
J Filipovič, J Hozzová, A Nezarat, J Ol'ha, F Petrovič
Journal of Parallel and Distributed Computing 160, 16-35, 2022
82022
Guided Optimization Method for Fast and Accurate Atomic Charges Computation
J PAZÚRIKOVÁ, A Křenek, L Matyska
European Simulation and Modelling Conference, 267-274, 2016
62016
Reducing the number of mean-square deviation calculations with floating close structure in metadynamics
J Pazúriková, A Křenek, V Spiwok, M Šimková
The Journal of Chemical Physics 146 (11), 115101, 2017
42017
Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps
J Oľha, J Hozzová, J Fousek, J Filipovič
Concurrency and Computation: Practice and Experience 32 (21), e5962, 2020
32020
Accelerated RMSD calculation for molecular metadynamics
J Filipovič, J Pazúriková, A Křenek, V Spiwok
Proceedings of the 2016 European Simulation and Modelling Conference, 278-280, 2016
32016
Large-Scale Molecular Dynamics Simulations for Highly Parallel Infrastructures
J Pazúriková
arXiv preprint arXiv:1402.7216, 2014
32014
Convergence of parareal algorithm applied on molecular dynamics simulations
J Pazúriková, L Matyska
MEMICS 2014, 101, 2014
32014
Improving ligand transport trajectory within flexible receptor in CaverDock
P Němcová, J Hozzová, J Filipovič
Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing, 619-626, 2022
12022
Property Map Collective Variable as a Useful Tool for a Force Field Correction
D Trapl, M Krupicka, V Visnovsky, J Hozzová, J Olíha, A Křenek, ...
Journal of Chemical Information and Modeling 62 (3), 567-576, 2022
12022
Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures
J Filipovič, J Hozzová, A Nezarat, J Oľha, F Petrovič
arXiv preprint arXiv:2102.05299, 2021
12021
Simulation of Ligand Transport in Receptors Using CaverDock
J Hozzová, O Vávra, D Bednář, J Filipovič
Protein-Ligand Interactions and Drug Design, 105-124, 2021
12021
Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures
J Hozzová, J Filipovič, A Nezarat, J Olíha, F Petrovič
Data in Brief 39, 107631, 2021
2021
Exploring Protein Folding Space with Neural Network Guided Simulations
A Křenek, J Hozzová, J Oľha, D Trapl, V Spiwok
EUROSIS-ETI, 2020
2020
Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations
J Pazúriková, J Oľha, A Křenek, V Spiwok
arXiv preprint arXiv:1801.02362, 2018
2018
Kernel Tuning Toolkit
F Petrovič, J Filipovič
Available at SSRN 4270108, 2018
2018
Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations
J Hozzová, J Oľha, A Křenek, V Spiwok
2018
Accelerating Chemical Simulation through Model Modification
J PAZÚRIKOVÁ
Masarykova univerzita, Fakulta informatiky, 2018
2018
The system can't perform the operation now. Try again later.
Articles 1–20