| MUSCLE: multiple sequence alignment with high accuracy and high throughput RC Edgar Nucleic acids research 32 (5), 1792-1797, 2004 | 42139 | 2004 |
| Search and clustering orders of magnitude faster than BLAST RC Edgar Bioinformatics 26 (19), 2460-2461, 2010 | 18974 | 2010 |
| UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 12945 | 2011 |
| UPARSE: highly accurate OTU sequences from microbial amplicon reads RC Edgar Nature methods 10 (10), 996-998, 2013 | 12194 | 2013 |
| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 9112 | 2012 |
| MUSCLE: a multiple sequence alignment method with reduced time and space complexity RC Edgar BMC bioinformatics 5 (1), 1-19, 2004 | 8562 | 2004 |
| Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012 | 2373 | 2012 |
| A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 2148 | 2012 |
| The genome sequence of taurine cattle: a window to ruminant biology and evolution Bovine Genome Sequencing and Analysis Consortium, CG Elsik, ... Science 324 (5926), 522-528, 2009 | 1080 | 2009 |
| UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing RC Edgar BioRxiv, 081257, 2016 | 1000 | 2016 |
| Error filtering, pair assembly and error correction for next-generation sequencing reads RC Edgar, H Flyvbjerg Bioinformatics 31 (21), 3476-3482, 2015 | 957 | 2015 |
| Genome sequence, comparative analysis, and population genetics of the domestic horse CM Wade, E Giulotto, S Sigurdsson, M Zoli, S Gnerre, F Imsland, TL Lear, ... Science 326 (5954), 865-867, 2009 | 804 | 2009 |
| Multiple sequence alignment RC Edgar, S Batzoglou Current opinion in structural biology 16 (3), 368-373, 2006 | 621 | 2006 |
| PILER: identification and classification of genomic repeats RC Edgar, EW Myers Bioinformatics 21 (suppl_1), i152-i158, 2005 | 595 | 2005 |
| SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences RC Edgar biorxiv, 074161, 2016 | 555 | 2016 |
| Updating the 97% identity threshold for 16S ribosomal RNA OTUs RC Edgar Bioinformatics 34 (14), 2371-2375, 2018 | 520 | 2018 |
| The genome sequence of taurine cattle: a window to ruminant biology and evolution TBG Sequencing, CG Elsik, RL Tellam, KC Worley, Analysis Consortium Science (New York, NY) 324 (5926), 522, 2009 | 376* | 2009 |
| PILER-CR: fast and accurate identification of CRISPR repeats RC Edgar BMC bioinformatics 8 (1), 1-6, 2007 | 360 | 2007 |
| A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ... Microbes and environments 30 (2), 145-150, 2015 | 236 | 2015 |
| Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences RC Edgar PeerJ 6, e4652, 2018 | 204 | 2018 |
