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Nick Croucher
Nick Croucher
Verified email at imperial.ac.uk
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Year
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
18872015
Rapid pneumococcal evolution in response to clinical interventions
NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ...
Science 331 (6016), 430-434, 2011
9792011
Evidence for several waves of global transmission in the seventh cholera pandemic
A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ...
Nature 477 (7365), 462-465, 2011
7862011
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ...
New England Journal of Medicine 366 (24), 2267-2275, 2012
7782012
Phandango: an interactive viewer for bacterial population genomics
J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ...
Bioinformatics 34 (2), 292-293, 2017
5092017
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
C Donati, NL Hiller, H Tettelin, A Muzzi, NJ Croucher, SV Angiuoli, ...
Genome biology 11 (10), R107, 2010
4302010
Antibiotic treatment of Clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts
TD Lawley, S Clare, AW Walker, D Goulding, RA Stabler, N Croucher, ...
Infection and immunity 77 (9), 3661-3669, 2009
4212009
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305, 2014
3952014
Population genomics of post-vaccine changes in pneumococcal epidemiology
NJ Croucher, JA Finkelstein, SI Pelton, PK Mitchell, GM Lee, J Parkhill, ...
Nature genetics 45 (6), 656, 2013
3922013
Studying bacterial transcriptomes using RNA-seq
NJ Croucher, NR Thomson
Current opinion in microbiology 13 (5), 619-624, 2010
3642010
Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores
TD Lawley, NJ Croucher, L Yu, S Clare, M Sebaihia, D Goulding, ...
Journal of bacteriology 191 (17), 5377-5386, 2009
2972009
A strand-specific RNA–Seq analysis of the transcriptome of the typhoid bacillus salmonella typhi
TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ...
PLoS genetics 5 (7), e1000569, 2009
2832009
Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis
KB Arnvig, I Comas, NR Thomson, J Houghton, HI Boshoff, NJ Croucher, ...
PLoS Pathog 7 (11), e1002342, 2011
2712011
Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis
MTG Holden, H Hauser, M Sanders, TH Ngo, I Cherevach, A Cronin, ...
PLoS One 4 (7), e6072, 2009
2712009
Fast and flexible bacterial genomic epidemiology with PopPUNK
JA Lees, SR Harris, G Tonkin-Hill, RA Gladstone, SW Lo, JN Weiser, ...
Genome research 29 (2), 304-316, 2019
2622019
Pneumococcal capsular switching: a historical perspective
KL Wyres, LM Lambertsen, NJ Croucher, L McGee, A von Gottberg, ...
Journal of Infectious Diseases 207 (3), 439-449, 2013
2272013
Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes
C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ...
PLoS Genet 10 (8), e1004547, 2014
2252014
Detection of recombination events in bacterial genomes from large population samples
P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ...
Nucleic acids research 40 (1), e6-e6, 2011
2142011
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
JA Lees, M Vehkala, N Välimäki, SR Harris, C Chewapreecha, ...
Nature Communications 7, 12797, 2016
2122016
Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81
NJ Croucher, D Walker, P Romero, N Lennard, GK Paterson, NC Bason, ...
Journal of bacteriology 191 (5), 1480-1489, 2009
1982009
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