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| Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions JN Burton, A Adey, RP Patwardhan, R Qiu, JO Kitzman, J Shendure Nature biotechnology 31 (12), 1119-1125, 2013 | 1232 | 2013 |
| Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ... Science 348 (6237), 910-914, 2015 | 1160 | 2015 |
| Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018 | 743 | 2018 |
| Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition A Adey, HG Morrison, Asan, X Xun, JO Kitzman, EH Turner, B Stackhouse, ... Genome biology 11, 1-17, 2010 | 620 | 2010 |
| Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ... Molecular cell 71 (5), 858-871. e8, 2018 | 581 | 2018 |
| Decoding long nanopore sequencing reads of natural DNA AH Laszlo, IM Derrington, BC Ross, H Brinkerhoff, A Adey, IC Nova, ... Nature biotechnology 32 (8), 829-833, 2014 | 476 | 2014 |
| The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line A Adey, JN Burton, JO Kitzman, JB Hiatt, AP Lewis, BK Martin, R Qiu, ... Nature 500 (7461), 207-211, 2013 | 403 | 2013 |
| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 375 | 2020 |
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| Haplotype-resolved genome sequencing of a Gujarati Indian individual JO Kitzman, AP MacKenzie, A Adey, JB Hiatt, RP Patwardhan, ... Nature biotechnology 29 (1), 59-63, 2011 | 301 | 2011 |
| Sequencing thousands of single-cell genomes with combinatorial indexing SA Vitak, KA Torkenczy, JL Rosenkrantz, AJ Fields, L Christiansen, ... Nature methods 14 (3), 302-308, 2017 | 284 | 2017 |
| Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer … CC Pritchard, SJ Salipante, K Koehler, C Smith, S Scroggins, B Wood, ... The Journal of Molecular Diagnostics 16 (1), 56-67, 2014 | 276 | 2014 |
| megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering S Boissel, J Jarjour, A Astrakhan, A Adey, A Gouble, P Duchateau, ... Nucleic acids research 42 (4), 2591-2601, 2014 | 247 | 2014 |
| Highly scalable generation of DNA methylation profiles in single cells RM Mulqueen, D Pokholok, SJ Norberg, KA Torkenczy, AJ Fields, D Sun, ... Nature biotechnology 36 (5), 428-431, 2018 | 227 | 2018 |
| Haplotype-resolved genome sequencing: experimental methods and applications MW Snyder, A Adey, JO Kitzman, J Shendure Nature Reviews Genetics 16 (6), 344-358, 2015 | 206 | 2015 |
| Massively parallel contiguity mapping JA Shendure, JJ Schwartz, AC Adey, CI Lee, JB Hiatt, JO Kitzman, ... US Patent 10,457,936, 2019 | 191 | 2019 |
| Tagmentation-based whole-genome bisulfite sequencing Q Wang, L Gu, A Adey, B Radlwimmer, W Wang, V Hovestadt, M Bähr, ... Nature protocols 8 (10), 2022-2032, 2013 | 179 | 2013 |
| In vitro, long-range sequence information for de novo genome assembly via transposase contiguity A Adey, JO Kitzman, JN Burton, R Daza, A Kumar, L Christiansen, ... Genome research 24 (12), 2041-2049, 2014 | 175 | 2014 |
| Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing A Adey, J Shendure Genome research 22 (6), 1139-1143, 2012 | 162 | 2012 |
