Dries Verdegem

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Bart GhesquiereHead of Metabolomics Expertise Center, KULeuven-VIBVerified email at kuleuven.vib.be
Peter Carmeliethoogleraar, Universiteit van Leuven, VIBVerified email at kuleuven.vib.be
Emma SchymanskiFull Prof & PI, Environmental Cheminformatics, LCSB, Uni LuxembourgVerified email at uni.lu
Céline BrouardINRAE, MIA Toulouse, FranceVerified email at inra.fr
Felicity AllenWellcome Sanger InstituteVerified email at sanger.ac.uk
Arpana Vaniya, Ph.D.Academic Coordinator at UC Davis West Coast Metabolomics CenterVerified email at ucdavis.edu
Sebastian BöckerProfessor für Bioinformatik, FSU JenaVerified email at uni-jena.de
Juho RousuProfessor, Department of Computer Science, Aalto UniversityVerified email at aalto.fi
Huibin ShenAmazonVerified email at amazon.com
Steffen NeumannLeibniz Institute of Plant BiochemistryVerified email at ipb-halle.de
Kai DührkopPhD, Lehrstuhl Bioinformatik, Friedrich-Schiller Universität JenaVerified email at uni-jena.de
Katie BentleyThe Francis Crick Institute / Kings College London / Boston UniversityVerified email at crick.ac.uk
Elisabetta DejanaGroup Leader at IFOM Firc Institute of Molecular Oncology, Full Professor of General Pathology at University of MilanVerified email at ifom.eu
Ivo CornelissenJanssen Pharmaceutals company of Johnson and JohnsonVerified email at its.jnj.com
Brian WongDepartment of Surgery, Washington University School of MedicineVerified email at wustl.edu
Roeland MerksProfessor of Mathematical Biology, Mathematical Institute and Institute of Biology, LeidenVerified email at math.leidenuniv.nl
Peter StaporVerified email at tulane.edu
Marco SaerensUniversite de LouvainVerified email at uclouvain.be
Pascal FrancqPaul Otlet InstituteVerified email at otlet-institute.org
Adrien DessyUniversité catholique de Louvain, ICTEAM, EPLVerified email at uclouvain.be

Dries Verdegem

Metabolomics Expertise Center - VIB / KU Leuven

Verified email at vib-kuleuven.be

computational metabolomics


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Hepatitis C virus NS5A protein is a substrate for the peptidyl-prolyl cis/trans isomerase activity of cyclophilins A and B X Hanoulle, A Badillo, JM Wieruszeski, D Verdegem, I Landrieu, ... Journal of Biological Chemistry 284 (20), 13589-13601, 2009	192	2009
Critical assessment of small molecule identification 2016: automated methods EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ... Journal of cheminformatics 9, 1-21, 2017	185	2017
Glycolytic regulation of cell rearrangement in angiogenesis B Cruys, BW Wong, A Kuchnio, D Verdegem, AR Cantelmo, LC Conradi, ... Nature communications 7 (1), 12240, 2016	148	2016
Endothelial cell metabolism: parallels and divergences with cancer cell metabolism D Verdegem, S Moens, P Stapor, P Carmeliet Cancer & metabolism 2, 1-19, 2014	133	2014
Domain 3 of NS5A protein from the hepatitis C virus has intrinsic α-helical propensity and is a substrate of cyclophilin A D Verdegem, A Badillo, JM Wieruszeski, I Landrieu, A Leroy, ... Journal of Biological Chemistry 286 (23), 20441-20454, 2011	121	2011
Domain 3 of non-structural protein 5A from hepatitis C virus is natively unfolded X Hanoulle, D Verdegem, A Badillo, JM Wieruszeski, F Penin, G Lippens Biochemical and biophysical research communications 381 (4), 634-638, 2009	106	2009
Structural characterization by nuclear magnetic resonance of the impact of phosphorylation in the proline‐rich region of the disordered Tau protein N Sibille, I Huvent, C Fauquant, D Verdegem, L Amniai, A Leroy, ... Proteins: Structure, Function, and Bioinformatics 80 (2), 454-462, 2012	98	2012
Deletion or inhibition of the oxygen sensor PHD1 protects against ischemic stroke via reprogramming of neuronal metabolism A Quaegebeur, I Segura, R Schmieder, D Verdegem, I Decimo, F Bifari, ... Cell metabolism 23 (2), 280-291, 2016	87	2016
Systematic identification of tubulin-interacting fragments of the microtubule-associated protein Tau leads to a highly efficient promoter of microtubule assembly C Fauquant, V Redeker, I Landrieu, JM Wieruszeski, D Verdegem, ... Journal of Biological Chemistry 286 (38), 33358-33368, 2011	73	2011
A graph-based approach to skill extraction from text I Kivimäki, A Panchenko, A Dessy, D Verdegem, P Francq, H Bersini, ... Proceedings of TextGraphs-8 graph-based methods for natural language …, 2013	64	2013
The domain 2 of the HCV NS5A protein is intrinsically unstructured X Hanoulle, A Badillo, D Verdegem, F Penin, G Lippens Protein and peptide letters 17 (8), 1012-1018, 2010	58	2010
Improved metabolite identification with MIDAS and MAGMa through MS/MS spectral dataset-driven parameter optimization D Verdegem, D Lambrechts, P Carmeliet, B Ghesquiere Metabolomics 12, 1-16, 2016	48	2016
Graphical interpretation of Boolean operators for protein NMR assignments D Verdegem, K Dijkstra, X Hanoulle, G Lippens Journal of biomolecular NMR 42, 11-21, 2008	24	2008
Selective backbone labelling of ILV methyl labelled proteins N Sibille, X Hanoulle, F Bonachera, D Verdegem, I Landrieu, ... Journal of biomolecular NMR 43, 219-227, 2009	18	2009
MAIMS: a software tool for sensitive metabolic tracer analysis through the deconvolution of ¹³C mass isotopologue profiles of large composite metabolites D Verdegem, HNB Moseley, W Vermaelen, AA Sanchez, B Ghesquière Metabolomics 13, 1-10, 2017	12	2017
Critical Assessment of Small Molecule Identification 2016 EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ...		2017
Probing the edge of protein (non)-structuration with NMR: a case study of the intrinsically disordered proteins human Tau and HCV NS5A D Verdegem Lille 1, 2009		2009
Het versnellen van GMA, een fortranprogramma uit het chemisch aromaticiteitsonderzoek D Verdegem		2006

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