Brian D. Weitzner
Brian D. Weitzner
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Cited by
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
De novo design of potent and selective mimics of IL-2 and IL-15
DA Silva, S Yu, UY Ulge, JB Spangler, KM Jude, C Labão-Almeida, LR Ali, ...
Nature 565 (7738), 186-191, 2019
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)
S Lyskov, FC Chou, SO Conchuir, BS Der, K Drew, D Kuroda, J Xu, ...
PloS one 8 (5), e63906, 2013
Benchmarking and analysis of protein docking performance in Rosetta v3. 2
S Chaudhury, M Berrondo, BD Weitzner, P Muthu, H Bergman, JJ Gray
PloS one 6 (8), e22477, 2011
Modeling and docking of antibody structures with Rosetta
BD Weitzner, JR Jeliazkov, S Lyskov, N Marze, D Kuroda, R Frick, ...
Nature protocols 12 (2), 401-416, 2017
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
J Adolf-Bryfogle, O Kalyuzhniy, M Kubitz, BD Weitzner, X Hu, Y Adachi, ...
PLoS computational biology 14 (4), e1006112, 2018
An integrated framework advancing membrane protein modeling and design
RF Alford, J Koehler Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS computational biology 11 (9), e1004398, 2015
OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization
G Ahdritz, N Bouatta, C Floristean, S Kadyan, Q Xia, W Gerecke, ...
Nature Methods, 1-11, 2024
The origin of CDR H3 structural diversity
BD Weitzner, RL Dunbrack, JJ Gray
Structure 23 (2), 302-311, 2015
Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization
BD Weitzner, D Kuroda, N Marze, J Xu, JJ Gray
Proteins: Structure, Function, and Bioinformatics 82 (8), 1611-1623, 2014
Real-time PyMOL visualization for Rosetta and PyRosetta
EH Baugh, S Lyskov, BD Weitzner, JJ Gray
PloS one 6 (8), e21931, 2011
Designing peptides on a quantum computer
VK Mulligan, H Melo, HI Merritt, S Slocum, BD Weitzner, AM Watkins, ...
BioRxiv, 752485, 2019
Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites
P Hosseinzadeh, PR Watson, TW Craven, X Li, S Rettie, F Pardo-Avila, ...
Nature Communications 12 (1), 3384, 2021
Accurate structure prediction of CDR H3 loops enabled by a novel structure-based C-terminal constraint
BD Weitzner, JJ Gray
The Journal of Immunology 198 (1), 505-515, 2017
A computational method for design of connected catalytic networks in proteins
BD Weitzner, Y Kipnis, AG Daniel, D Hilvert, D Baker
Protein Science 28 (12), 2036-2041, 2019
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLoS computational biology 16 (5), e1007507, 2020
An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases
B Weitzner, T Meehan, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 75 (2), 289-295, 2009
The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8
M Guttman, NN Padte, Y Huang, J Yu, GJ Rocklin, BD Weitzner, M Scian, ...
Scientific reports 10 (1), 14313, 2020
Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation
AS Ford, BD Weitzner, CD Bahl
Protein Science 29 (1), 43-51, 2020
A framework to simplify combined sampling strategies in Rosetta
JR Porter, BD Weitzner, OF Lange
PLOS one 10 (9), e0138220, 2015
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