Follow
Alla Lapidus
Alla Lapidus
Unknown affiliation
No verified email
Title
Cited by
Cited by
Year
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
F Kunst, N Ogasawara, I Moszer, AM Albertini, G Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
47801997
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
14622017
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
12312020
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11652013
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056-1060, 2009
10732009
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ...
Nature 423 (6935), 87-91, 2003
9862003
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
DA Sela, J Chapman, A Adeuya, JH Kim, F Chen, TR Whitehead, ...
Proceedings of the National Academy of Sciences 105 (48), 18964-18969, 2008
9632008
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Research in Computational Molecular Biology: 17th Annual International …, 2013
7922013
The genomic basis of trophic strategy in marine bacteria
FM Lauro, D McDougald, T Thomas, TJ Williams, S Egan, S Rice, ...
Proceedings of the National Academy of Sciences 106 (37), 15527-15533, 2009
7202009
The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode
J Foster, M Ganatra, I Kamal, J Ware, K Makarova, N Ivanova, ...
PLoS biology 3 (4), e121, 2005
7202005
Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
DW Udwary, L Zeigler, RN Asolkar, V Singan, A Lapidus, W Fenical, ...
Proceedings of the National Academy of Sciences 104 (25), 10376-10381, 2007
6522007
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
A Bolotin, B Quinquis, P Renault, A Sorokin, SD Ehrlich, S Kulakauskas, ...
Nature biotechnology 22 (12), 1554-1558, 2004
6462004
The plant cell wall–decomposing machinery underlies the functional diversity of forest fungi
DC Eastwood, D Floudas, M Binder, A Majcherczyk, P Schneider, A Aerts, ...
Science 333 (6043), 762-765, 2011
6192011
A bioinformatician's guide to metagenomics
V Kunin, A Copeland, A Lapidus, K Mavromatis, P Hugenholtz
Microbiology and molecular biology reviews 72 (4), 557-578, 2008
5772008
Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus
GC Kettler, AC Martiny, K Huang, J Zucker, ML Coleman, S Rodrigue, ...
PLoS genetics 3 (12), e231, 2007
5772007
Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillusspecies
MW Rey, P Ramaiya, BA Nelson, SD Brody-Karpin, EJ Zaretsky, M Tang, ...
Genome biology 5, 1-12, 2004
5382004
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
H Feil, WS Feil, P Chain, F Larimer, G DiBartolo, A Copeland, A Lykidis, ...
Proceedings of the National Academy of Sciences 102 (31), 11064-11069, 2005
5302005
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
X Bai, J Zhang, A Ewing, SA Miller, A Jancso Radek, DV Shevchenko, ...
Journal of bacteriology 188 (10), 3682-3696, 2006
5272006
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
5262008
plasmidSPAdes: assembling plasmids from whole genome sequencing data
D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 32 (22), 3380-3387, 2016
5072016
The system can't perform the operation now. Try again later.
Articles 1–20