Ngan Nguyen
Ngan Nguyen
Atreca Inc.
Verified email at atreca.com
Title
Cited by
Cited by
Year
The UCSC genome browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
9452015
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5522011
Genome 10K: a proposal to obtain whole-genome sequence for 10 000 vertebrate species
Genome 10K Community of Scientists
Journal of Heredity 100 (6), 659-674, 2009
3802009
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ...
Nature 516 (7530), 242-245, 2014
3252014
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
BJ Raney, TR Dreszer, GP Barber, H Clawson, PA Fujita, T Wang, ...
Bioinformatics 30 (7), 1003-1005, 2014
2992014
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 2014
2742014
Cactus: Algorithms for genome multiple sequence alignment
B Paten, D Earl, N Nguyen, M Diekhans, D Zerbino, D Haussler
Genome research 21 (9), 1512-1528, 2011
2122011
Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes
N Gupta, J Benhamida, V Bhargava, D Goodman, E Kain, I Kerman, ...
Genome research 18 (7), 1133-1142, 2008
1252008
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
902014
Building a pan-genome reference for a population
N Nguyen, G Hickey, DR Zerbino, B Raney, D Earl, J Armstrong, WJ Kent, ...
Journal of Computational Biology 22 (5), 387-401, 2015
532015
Non-progressing cancer patients have persistent B cell responses expressing shared antibody paratopes that target public tumor antigens
J DeFalco, M Harbell, A Manning-Bog, G Baia, A Scholz, B Millare, ...
Clinical Immunology 187, 37-45, 2018
442018
Molecular definition of multiple sites of antibody inhibition of malaria transmission-blocking vaccine antigen Pfs25
SW Scally, B McLeod, A Bosch, K Miura, Q Liang, S Carroll, S Reponen, ...
Nature communications 8 (1), 1-11, 2017
382017
Comparative assembly hubs: web-accessible browsers for comparative genomics
N Nguyen, G Hickey, BJ Raney, J Armstrong, H Clawson, A Zweig, ...
Bioinformatics 30 (23), 3293-3301, 2014
282014
Longitudinal analysis of acute and convalescent B cell responses in a human primary dengue serotype 2 infection model
UK Nivarthi, HA Tu, MJ Delacruz, J Swanstrom, B Patel, AP Durbin, ...
EBioMedicine 41, 465-478, 2019
152019
Potent antibody lineage against malaria transmission elicited by human vaccination with Pfs25
B McLeod, K Miura, SW Scally, A Bosch, N Nguyen, H Shin, D Kim, ...
Nature communications 10 (1), 1-11, 2019
122019
Building a pangenome reference for a population
N Nguyen, G Hickey, DR Zerbino, B Raney, D Earl, J Armstrong, ...
International Conference on Research in Computational Molecular Biology, 207-221, 2014
72014
Increased somatic hypermutation in the immunoglobulin sequences of melanoma patients who have durable response to checkpoint inhibitor therapy
N Nguyen, A Mamchak, M Severgnini, KS Williamson, X Wu, EF Drabek, ...
Cancer Research 78 (13 Supplement), 615-615, 2018
32018
Distinct clonal evolution of B-cells in HIV controllers with neutralizing antibody breadth
D Cizmeci, G Lofano, E Rossignol, AS Dugast, D Kim, G Cavet, N Nguyen, ...
Elife 10, e62648, 2021
12021
Addressing the omics data explosion: A comprehensive reference genome representation and the democratization of comparative genomics and immunogenomics
NK Nguyen
University of California, Santa Cruz, 2014
12014
Longitudinal analysis of acute and convalescent B cell responses in a human primary dengue serotype 2 infection model (vol 41, pg 465, 2019)
UK Nivarthi, HA Tu, MJ Delacruz, J Swanstrom, B Patel, AP Durbin, ...
EBIOMEDICINE 54, 2020
2020
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