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Ilya Korsunsky
Ilya Korsunsky
Harvard Medical School
Verified email at bwh.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Fast, sensitive and accurate integration of single-cell data with Harmony
I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ...
Nature methods 16 (12), 1289-1296, 2019
55652019
Distinct fibroblast subsets drive inflammation and damage in arthritis
AP Croft, J Campos, K Jansen, JD Turner, J Marshall, M Attar, L Savary, ...
Nature 570 (7760), 246-251, 2019
7852019
Notch signalling drives synovial fibroblast identity and arthritis pathology
K Wei, I Korsunsky, JL Marshall, A Gao, GFM Watts, T Major, AP Croft, ...
Nature 582 (7811), 259-264, 2020
3912020
BioNetGen 2.2: advances in rule-based modeling
LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ...
Bioinformatics 32 (21), 3366-3368, 2016
2532016
IL-1-driven stromal–neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies
M Friedrich, M Pohin, MA Jackson, I Korsunsky, SJ Bullers, ...
Nature Medicine 27 (11), 1970-1981, 2021
2012021
Efficient and precise single-cell reference atlas mapping with Symphony
JB Kang, A Nathan, K Weinand, F Zhang, N Millard, L Rumker, DB Moody, ...
Nature communications 12 (1), 5890, 2021
1682021
Mixed-effects association of single cells identifies an expanded effector CD4+ T cell subset in rheumatoid arthritis
CY Fonseka, DA Rao, NC Teslovich, I Korsunsky, SK Hannes, ...
Science translational medicine 10 (463), eaaq0305, 2018
1652018
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
F Zhang, JR Mears, L Shakib, JI Beynor, S Shanaj, I Korsunsky, A Nathan, ...
Genome Medicine 13, 1-17, 2021
1632021
Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions
M Gutierrez-Arcelus, N Teslovich, AR Mola, RB Polidoro, A Nathan, H Kim, ...
Nature communications 10 (1), 687, 2019
1632019
Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases
I Korsunsky, K Wei, M Pohin, EY Kim, F Barone, T Major, E Taylor, ...
Med 3 (7), 481-518. e14, 2022
1562022
CAPRI: efficient inference of cancer progression models from cross-sectional data
D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ...
Bioinformatics 31 (18), 3016-3026, 2015
1052015
Presto scales Wilcoxon and auROC analyses to millions of observations
I Korsunsky, A Nathan, N Millard, S Raychaudhuri
BioRxiv, 653253, 2019
972019
ru, and Raychaudhuri, S.(2019). Fast, sensitive and accurate integration of single-cell data with Harmony
I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ...
Nat. Methods 16, 1289-1296, 2019
942019
Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics
YA Reshef, L Rumker, JB Kang, A Nathan, I Korsunsky, S Asgari, ...
Nature biotechnology 40 (3), 355-363, 2022
532022
Persons with chronic spinal cord injury have decreased natural killer cell and increased toll-like receptor/inflammatory gene expression
P Herman, A Stein, K Gibbs, I Korsunsky, P Gregersen, O Bloom
Journal of neurotrauma 35 (15), 1819-1829, 2018
502018
Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy
JH Chen, LT Nieman, M Spurrell, V Jorgji, L Elmelech, P Richieri, KH Xu, ...
Nature Immunology 25 (4), 644-658, 2024
422024
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation
F Zhang, JR Mears, L Shakib, JI Beynor, S Shanaj, I Korsunsky, A Nathan, ...
BioRxiv, 2020
402020
Novel method for high-throughput full-length IGHV-DJ sequencing of the immune repertoire from bulk B-cells with single-cell resolution
S Vergani, I Korsunsky, AN Mazzarello, G Ferrer, N Chiorazzi, D Bagnara
Frontiers in immunology 8, 1157, 2017
392017
Molecular signatures in systemic lupus erythematosus: distinction between disease flare and infection
M Mackay, M Oswald, J Sanchez-Guerrero, J Lichauco, C Aranow, ...
Lupus science & medicine 3 (1), e000159, 2016
372016
Cellular deconstruction of inflamed synovium defines diverse inflammatory phenotypes in rheumatoid arthritis
F Zhang, AH Jonsson, A Nathan, K Wei, N Millard, Q Xiao, ...
BioRxiv, 2022.02. 25.481990, 2022
362022
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