Elena Papaleo

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Matteo LambrughiPh.D. in Industrial Biotechnology, University of Milano BicoccaVerified email at campus.unimib.it
Luca De GioiabicoccaVerified email at unimib.it
Matteo TibertiDanish Cancer Society Research Center (DCRC)Verified email at cancer.dk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenVerified email at bio.ku.dk
Gaetano InvernizziSpecialist, Novo Nordisk A/SVerified email at novonordisk.com
Birthe B. KragelundProfessor of protein biophysics, University of CopenhagenVerified email at bio.ku.dk
Marco PasiLaboratoire de Biologie et Pharmacologie Appliquée - ENS Paris-SaclayVerified email at ens-paris-saclay.fr
Salvador VenturaInstitute of Biotechnology and Biomedicine (IBB), Universitat Autonoma de BarcelonaVerified email at uab.es
Laura RiccardiPost Doc, Italian Institute of Technology (IIT), GenovaVerified email at iit.it
Francesco Luigi GervasioProfessor of Pharmaceutical Sciences at University of Geneva & Professor of Chemistry UCLVerified email at unige.ch
Paolo Mereghettipost-doc, Italian Institute of Technology, PisaVerified email at iit.it
Natalello AntoninoUniversity of Milano-Bicocca, Milan, ItalyVerified email at unimib.it
Ruth NussinovProfessor and Senior Principal Investigator, National Cancer Institute and Tel Aviv UniversityVerified email at post.tau.ac.il
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenVerified email at di.ku.dk
Magnús KristjánssonProfessor of Biochemistry, University of IcelandVerified email at hi.is
Sigridur ThorbjarnardottirResearch Scientist, University of IcelandVerified email at hi.is
Bjarni ÁsgeirssonProfessor of Biochemistry, University of IcelandVerified email at hi.is
Boris SarcevicUnit Head, St. Vincent's InstituteVerified email at svi.edu.au
Nicola CasiraghiFondazione The Microsoft Research University of Trento Centre for Computational and Systems BiologyVerified email at cosbi.eu
maurizio bruschiuniversità di milano-bicoccaVerified email at unimib.it

Elena Papaleo

Danish Cancer Society Research Center and Technical University of Denmark

Verified email at cancer.dk


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Guidelines for the use and interpretation of assays for monitoring autophagy DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ... autophagy 17 (1), 1-382, 2021	10897	2021
Promoting transparency and reproducibility in enhanced molecular simulations Nature methods 16 (8), 670-673, 2019	738	2019
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx M Mounir, M Lucchetta, TC Silva, C Olsen, G Bontempi, X Chen, ... PLoS computational biology 15 (3), e1006701, 2019	402	2019
The role of protein loops and linkers in conformational dynamics and allostery E Papaleo, G Saladino, M Lambrughi, K Lindorff-Larsen, FL Gervasio, ... Chemical reviews 116 (11), 6391-6423, 2016	384	2016
Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: The myoglobin case E Papaleo, P Mereghetti, P Fantucci, R Grandori, L De Gioia Journal of molecular graphics and modelling 27 (8), 889-899, 2009	382	2009
Guidelines for the use and interpretation of assays for monitoring autophagy 577 DJ Klionsky Autophagy 12 (1-222), 578, 2016	261*	2016
DisProt: intrinsic protein disorder annotation in 2020 A Hatos, B Hajdu-Soltész, AM Monzon, N Palopoli, L Álvarez, ... Nucleic acids research 48 (D1), D269-D276, 2020	250	2020
HUWE1 E3 ligase promotes PINK1/PARKIN-independent mitophagy by regulating AMBRA1 activation via IKKα A Di Rita, A Peschiaroli, P D′ Acunzo, D Strobbe, Z Hu, J Gruber, ... Nature communications 9 (1), 3755, 2018	207	2018
Protein aggregation: mechanisms and functional consequences G Invernizzi, E Papaleo, R Sabate, S Ventura The international journal of biochemistry & cell biology 44 (9), 1541-1554, 2012	190	2012
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018	154	2018
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation F Quaglia, B Mészáros, E Salladini, A Hatos, R Pancsa, LB Chemes, ... Nucleic acids research 50 (D1), D480-D487, 2022	138	2022
An efficient method for estimating the hydrodynamic radius of disordered protein conformations M Nygaard, BB Kragelund, E Papaleo, K Lindorff-Larsen Biophysical journal 113 (3), 550-557, 2017	132	2017
Comparing molecular dynamics force fields in the essential subspace F Martín-García, E Papaleo, P Gomez-Puertas, W Boomsma, ... PLoS One 10 (3), e0121114, 2015	111	2015
PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins M Tiberti, G Invernizzi, M Lambrughi, Y Inbar, G Schreiber, E Papaleo Journal of chemical information and modeling 54 (5), 1537-1551, 2014	108	2014
ETHE1 mutations are specific to ethylmalonic encephalopathy V Tiranti, E Briem, E Lamantea, R Mineri, E Papaleo, L De Gioia, F Forlani, ... Journal of medical genetics 43 (4), 340-346, 2006	104	2006
AMBRA1 regulates cyclin D to guard S-phase entry and genomic integrity E Maiani, G Milletti, F Nazio, SG Holdgaard, J Bartkova, S Rizza, ... Nature 592 (7856), 799-803, 2021	101	2021
Absence of neurofibromin induces an oncogenic metabolic switch via mitochondrial ERK-mediated phosphorylation of the chaperone TRAP1 I Masgras, F Ciscato, AM Brunati, E Tibaldi, S Indraccolo, M Curtarello, ... Cell reports 18 (3), 659-672, 2017	95	2017
An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass J Salamanca Viloria, MF Allega, M Lambrughi, E Papaleo Scientific reports 7 (1), 2838, 2017	93	2017
Predicting the impact of Lynch syndrome-causing missense mutations from structural calculations SV Nielsen, A Stein, AB Dinitzen, E Papaleo, MH Tatham, EG Poulsen, ... PLoS genetics 13 (4), e1006739, 2017	92	2017
Flexibility and enzymatic cold-adaptation: a comparative molecular dynamics investigation of the elastase family E Papaleo, L Riccardi, C Villa, P Fantucci, L De Gioia Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1764 (8), 1397-1406, 2006	91	2006

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