Konstantin Okonechnikov
Konstantin Okonechnikov
Подтвержден адрес электронной почты в домене dkfz.de - Главная страница
Unipro UGENE: a unified bioinformatics toolkit
K Okonechnikov, O Golosova, M Fursov, Ugene Team
Bioinformatics 28 (8), 1166-1167, 2012
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
K Okonechnikov, A Conesa, F García-Alcalde
Bioinformatics 32 (2), 292-294, 2016
Qualimap: evaluating next generation sequencing alignment data
F García-Alcalde, K Okonechnikov, J Carbonell, LM Ruiz, S Götz, ...
Bioinformatics, 2012
DNA methylation-based classification and grading system for meningioma: a multicentre, retrospective analysis
F Sahm, D Schrimpf, D Stichel, DTW Jones, T Hielscher, S Schefzyk, ...
The lancet oncology 18 (5), 682-694, 2017
A mechanistic classification of clinical phenotypes in neuroblastoma
S Ackermann, M Cartolano, B Hero, A Welte, Y Kahlert, A Roderwieser, ...
Science 362 (6419), 1165-1170, 2018
Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling
SC Mack, KW Pajtler, L Chavez, K Okonechnikov, KC Bertrand, X Wang, ...
Nature 553 (7686), 101-105, 2018
UGENE team. 2012
K Okonechnikov, O Golosova, M Fursov
Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28 (8), 1166-1167, 2012
Aberrant ERBB4-SRC signaling as a hallmark of group 4 medulloblastoma revealed by integrative phosphoproteomic profiling
A Forget, L Martignetti, S Puget, L Calzone, S Brabetz, D Picard, ...
Cancer cell 34 (3), 379-395. e7, 2018
MYCN amplification drives an aggressive form of spinal ependymoma
DR Ghasemi, M Sill, K Okonechnikov, A Korshunov, S Yip, PW Schutz, ...
Acta neuropathologica 138 (6), 1075-1089, 2019
YAP1 subgroup supratentorial ependymoma requires TEAD and nuclear factor I-mediated transcriptional programmes for tumorigenesis
KW Pajtler, Y Wei, K Okonechnikov, PBG Silva, M Vouri, L Zhang, ...
Nature communications 10 (1), 1-16, 2019
InFusion: advancing discovery of fusion genes and chimeric transcripts from deep RNA-sequencing data
K Okonechnikov, A Imai-Matsushima, L Paul, A Seitz, TF Meyer, ...
PloS one 11 (12), e0167417, 2016
Cross-Species Genomics Reveals Oncogenic Dependencies in ZFTA/C11orf95 Fusion–Positive Supratentorial EpendymomasZFTA Fusion Genes in Supratentorial Ependymomas
T Zheng, DR Ghasemi, K Okonechnikov, A Korshunov, M Sill, KK Maass, ...
Cancer discovery 11 (9), 2230-2247, 2021
Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome
SA Hartlieb, L Sieverling, M Nadler-Holly, M Ziehm, UH Toprak, ...
Nature communications 12 (1), 1-18, 2021
MYC drives group 3 medulloblastoma through transformation of Sox2+ astrocyte progenitor cells
R Tao, N Murad, Z Xu, P Zhang, K Okonechnikov, M Kool, ...
Cancer research 79 (8), 1967-1980, 2019
Developmental and evolutionary dynamics of cis-regulatory elements in mouse cerebellar cells
I Sarropoulos, M Sepp, R Frömel, K Leiss, N Trost, E Leushkin, ...
Science 373 (6558), eabg4696, 2021
InTAD: chromosome conformation guided analysis of enhancer target genes
K Okonechnikov, S Erkek, JO Korbel, SM Pfister, L Chavez
BMC bioinformatics 20 (1), 1-7, 2019
Functional loss of a noncanonical BCOR–PRC1. 1 complex accelerates SHH-driven medulloblastoma formation
LM Kutscher, K Okonechnikov, NV Batora, J Clark, PBG Silva, M Vouri, ...
Genes & development 34 (17-18), 1161-1176, 2020
Subgroup and subtype-specific outcomes in adult medulloblastoma
H Coltin, L Sundaresan, KS Smith, P Skowron, L Massimi, CG Eberhart, ...
Acta neuropathologica 142 (5), 859-871, 2021
Molecular analysis of pediatric CNS-PNET revealed nosologic heterogeneity and potent diagnostic markers for CNS neuroblastoma with FOXR2-activation
A Korshunov, K Okonechnikov, F Schmitt-Hoffner, M Ryzhova, F Sahm, ...
Acta neuropathologica communications 9 (1), 1-12, 2021
Recurrent fusions in PLAGL1 define a distinct subset of pediatric-type supratentorial neuroepithelial tumors
P Sievers, SC Henneken, C Blume, M Sill, D Schrimpf, D Stichel, ...
Acta neuropathologica 142 (5), 827-839, 2021
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