| High-resolution 3D models of Caulobacter crescentus chromosome reveal genome structural variability and organization A Yildirim, M Feig Nucleic acids research 46 (8), 3937-3952, 2018 | 44 | 2018 |
| Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer ML Stackpole, W Zeng, S Li, CC Liu, Y Zhou, S He, A Yeh, Z Wang, F Sun, ... Nature communications 13 (1), 5566, 2022 | 35 | 2022 |
| Conformational preferences of DNA in reduced dielectric environments A Yildirim, M Sharma, BM Varner, L Fang, M Feig The Journal of Physical Chemistry B 118 (37), 10874-10881, 2014 | 29 | 2014 |
| Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations L Boninsegna, A Yildirim, G Polles, Y Zhan, SA Quinodoz, EH Finn, ... Nature methods 19 (8), 938-949, 2022 | 24 | 2022 |
| Solvent‐Catalyzed Ring–Chain–Ring Tautomerization in Axially Chiral Compounds A Yildirim, FAS Konuklar, S Catak, V Van Speybroeck, M Waroquier, ... Chemistry–A European Journal 18 (40), 12725-12732, 2012 | 14 | 2012 |
| Cinchona Alkaloid Catalyzed Asymmetric Desymmetrization of meso‐Cyclic Anhydrides: The Origins of Stereoselectivity B Dedeoglu, S Catak, A Yildirim, C Bolm, V Aviyente ChemCatChem 7 (24), 4173-4179, 2015 | 12 | 2015 |
| Uncovering the principles of genome folding by 3D chromatin modeling A Yildirim, L Boninsegna, Y Zhan, F Alber Cold Spring Harbor Perspectives in Biology 14 (6), a039693, 2022 | 11 | 2022 |
| Evaluating the role of the nuclear microenvironment in gene function by population-based modeling A Yildirim, N Hua, L Boninsegna, Y Zhan, G Polles, K Gong, S Hao, W Li, ... Nature Structural & Molecular Biology 30 (8), 1193-1206, 2023 | 9* | 2023 |
| Integrative approaches in genome structure analysis L Boninsegna, A Yildirim, Y Zhan, F Alber Structure 30 (1), 24-36, 2022 | 9 | 2022 |
| Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments A Yildirim, N Brenner, R Sutherland, M Feig BMC biophysics 11, 1-15, 2018 | 6 | 2018 |
| Conformational analysis of chromosome structures reveals vital role of chromosome morphology in gene function Y Zhan, A Yildirim, L Boninsegna, F Alber bioRxiv, 2023.02. 18.528138, 2023 | 4 | 2023 |
| Genome structure calculation through comprehensive data integration G Polles, N Hua, A YiIdirim, F Alber Modeling the 3D Conformation of Genomes, 253, 2019 | 3 | 2019 |
| Prediction of the 1H NMR spectra of epoxy-fused cyclopentane derivatives by calculations of chemical shifts and spin–spin coupling constants C Özen, A Yildirim, NŞ Tüzün, P Haslak, E Doğan, E Acar, V Aviyente Molecular Physics 111 (20), 3147-3155, 2013 | 3 | 2013 |
| The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle D Strenkert, A Yildirim, J Yan, Y Yoshinaga, M Pellegrini, RC O'Malley, ... The Plant Journal 112 (2), 352-368, 2022 | 2* | 2022 |
| Studying the impact of the nuclear topography on gene function A Yildirim, F Alber Nature Structural & Molecular Biology 30, 1062-1063, 2023 | | 2023 |
| Multiscale Modeling of Nucleic Acids in Cellular Environments A Yildirim Michigan State University, 2017 | | 2017 |
