| The Douglas-fir genome sequence reveals specialization of the photosynthetic apparatus in Pinaceae DB Neale, PE McGuire, NC Wheeler, KA Stevens, MW Crepeau, ... G3: Genes, Genomes, Genetics 7 (9), 3157-3167, 2017 | 104 | 2017 |
| The Cycas genome and the early evolution of seed plants Y Liu, S Wang, L Li, T Yang, S Dong, T Wei, S Wu, Y Liu, Y Gong, X Feng, ... Nature Plants 8 (4), 389-401, 2022 | 101 | 2022 |
| A reference genome sequence for giant sequoia AD Scott, AV Zimin, D Puiu, R Workman, M Britton, S Zaman, M Caballero, ... G3: Genes, Genomes, Genetics 10 (11), 3907-3919, 2020 | 73 | 2020 |
| Growing and cultivating the forest genomics database, TreeGenes T Falk, N Herndon, E Grau, S Buehler, P Richter, S Zaman, EM Baker, ... Database 2018, bay084, 2018 | 39 | 2018 |
| Cyberinfrastructure to improve forest health and productivity: the role of tree databases in connecting genomes, phenomes, and the environment JL Wegrzyn, MA Staton, NR Street, D Main, E Grau, N Herndon, S Buehler, ... Frontiers in plant science 10, 813, 2019 | 35 | 2019 |
| Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin DB Neale, AV Zimin, S Zaman, AD Scott, B Shrestha, RE Workman, ... G3 12 (1), jkab380, 2022 | 33 | 2022 |
| Comparative genomics of six Juglans species reveals disease‐associated gene family contractions AJ Trouern‐Trend, T Falk, S Zaman, M Caballero, DB Neale, CH Langley, ... The Plant Journal 102 (2), 410-423, 2020 | 27 | 2020 |
| Toward genomic selection in Pinus taeda: Integrating resources to support array design in a complex conifer genome M Caballero, E Lauer, J Bennett, S Zaman, S McEvoy, J Acosta, ... Applications in Plant Sciences 9 (6), e11439, 2021 | 25 | 2021 |
| Growing and cultivating the forest genomics database, TreeGenes T Falk, N Herndon, E Grau, S Buehler, P Richter, S Zaman, EM Baker, ... Database: The Journal of Biological Databases and Curation 2019, 2019 | 12 | 2019 |
| Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes VS Vuruputoor, D Monyak, KC Fetter, C Webster, A Bhattarai, B Shrestha, ... Applications in Plant Sciences 11 (4), e11533, 2023 | 10 | 2023 |
| The giant sequoia genome and proliferation of disease resistance genes AD Scott, AV Zimin, D Puiu, R Workman, M Britton, S Zaman, M Caballero, ... bioRxiv, 2020.03. 17.995944, 2020 | 10 | 2020 |
| Phylogenetic reconciliation reveals extensive ancestral recombination in Sarbecoviruses and the SARS-CoV-2 lineage S Zaman, S Sledzieski, B Berger, YC Wu, MS Bansal BioRxiv, 2021.08. 12.456131, 2021 | 3 | 2021 |
| A long-read and short-read transcriptomics approach provides the first high-quality reference transcriptome and genome annotation for Pseudotsuga menziesii (Douglas-fir) VME Velasco, A Ferreira, S Zaman, D Noordermeer, I Ensminger, ... G3 13 (2), jkac304, 2023 | 1 | 2023 |
| On partial gene transfer and its impact on gene tree reconstruction S Zaman, MS Bansal RECOMB International Workshop on Comparative Genomics, 168-186, 2022 | 1 | 2022 |
| Reducing the impact of domain rearrangement on sequence alignment and phylogeny reconstruction S Zaman, MS Bansal International Symposium on Bioinformatics Research and Applications, 337-350, 2023 | | 2023 |
| Benchmarking protocol for plant genomes VS Vuruputoor, D Monyak, KC Fetter, A Bhattarai, B Shrestha, S Zaman, ... | | 2023 |
| Correction to Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes VS Vuruputoor, D Monyak, KC Fetter, C Webster, A Bhattarai, B Shrestha, ... | | 2023 |
| virDTL: Viral recombination analysis through phylogenetic reconciliation and its application to sarbecoviruses and SARS-CoV-2 S Zaman, S Sledzieski, B Berger, YC Wu, MS Bansal Journal of Computational Biology 30 (1), 3-20, 2023 | | 2023 |
| Phylogenetic reconciliation reveals extensive ancestral recombination in Sarbecoviruses and the SARS-CoV-2 lineage (preprint) S Zaman, S Sledzieski, B Berger, YC Wu, MS Bansal | | 2021 |
| The giant sequoia genome and proliferation of disease resistance genes AV Zimin, D Puiu, R Workman, M Britton, S Zaman, M Caballero, AC Read, ... ADVANCES IN WATER RESOURCES, SOUTHHAMPTON, UK, COMPUTATIONAL MECHANICS …, 2020 | | 2020 |
