Andrey Prjibelski
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual International Conference on Research in Computational Molecular …, 2013
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
GigaScience 8 (9), giz100, 2019
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies
E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski
Bioinformatics 32 (14), 2210-2212, 2016
Icarus: visualizer for de novo assembly evaluation
A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich
Bioinformatics 32 (21), 3321-3323, 2016
Assembling short reads from jumping libraries with large insert sizes
I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner
Bioinformatics 31 (20), 3262-3268, 2015
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current Protocols in Bioinformatics 70 (1), e102, 2020
De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments
B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ...
Cell systems 10 (1), 99-108. e5, 2020
A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain
A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ...
Nature Communications 12 (1), 1-16, 2021
Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)
GD Puglia, AD Prjibelski, D Vitale, E Bushmanova, KJ Schmid, ...
BMC genomics 21 (1), 1-17, 2020
Seed transcriptome annotation reveals enhanced expression of genes related to ROS homeostasis and ethylene metabolism at alternating temperatures in wild cardoon
HR Huarte, G Puglia, AD Prjibelski, SA Raccuia
Plants 9 (9), 1225, 2020
SGTK: a toolkit for visualization and assessment of scaffold graphs
O Kunyavskaya, AD Prjibelski
Bioinformatics 35 (13), 2303-2305, 2019
De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments.
B Behsaz, H Mohimani, AA Gurevich, AD Prjibelski, MF Fisher, L Smarr, ...
RECOMB, 289-291, 2019
Extending rnaSPAdes functionality for hybrid transcriptome assembly
AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ...
BMC Bioinformatics 21 (302), 2020
Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish
KA Demin, AM Lakstygal, NA Krotova, A Masharsky, N Tagawa, ...
Scientific reports 10 (1), 1-20, 2020
Human pericentromeric tandemly repeated DNA is transcribed at the end of oocyte maturation and is associated with membraneless mitochondria-associated structures
MA Dobrynin, NM Korchagina, AD Prjibelski, D Shafranskaya, ...
Scientific reports 10 (1), 1-15, 2020
Liquid drop of DNA libraries reveals total genome information
SS Terekhov, IE Eliseev, LA Ovchinnikova, MR Kabilov, AD Prjibelski, ...
Proceedings of the National Academy of Sciences 117 (44), 27300-27306, 2020
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