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Jiri Damborsky
Jiri Damborsky
Verified email at chemi.muni.cz - Homepage
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Cited by
Year
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures
E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ...
Public Library of Science 8 (10), e1002708, 2012
9482012
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský
BMC bioinformatics 7 (1), 1-9, 2006
6032006
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...
PLoS computational biology 10 (1), e1003440, 2014
5822014
Strategies for stabilization of enzymes in organic solvents
V Stepankova, S Bidmanova, T Koudelakova, Z Prokop, R Chaloupkova, ...
Acs Catalysis 3 (12), 2823-2836, 2013
5112013
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ...
Nature chemical biology 5 (10), 727-733, 2009
3032009
Bioremediation 3.0: engineering pollutant-removing bacteria in the times of systemic biology
P Dvořák, PI Nikel, J Damborský, V de Lorenzo
Biotechnology advances 35 (7), 845-866, 2017
2262017
Computational tools for designing and engineering enzymes
J Damborsky, J Brezovsky
Current opinion in chemical biology 19, 8-16, 2014
2212014
Gates of enzymes
A Gora, J Brezovsky, J Damborsky
Chemical Reviews 113 (8), 5871-5923, 2013
2192013
HotSpot Wizard: a web server for identification of hot spots in protein engineering
A Pavelka, E Chovancova, J Damborsky
Nucleic acids research 37 (suppl_2), W376-W383, 2009
2102009
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...
Bioinformatics 34 (20), 3586-3588, 2018
2062018
Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26,
J Marek, J Vévodová, IK Smatanová, Y Nagata, LA Svensson, J Newman, ...
Biochemistry 39 (46), 14082-14086, 2000
1882000
Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26
Y Nagata, K Miyauchi, J Damborsky, K Manova, A Ansorgová, M Takagi
Applied and Environmental Microbiology 63 (9), 3707-3710, 1997
1881997
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel
R Chaloupková, J Sýkorová, Z Prokop, A Jesenská, M Monincová, ...
Journal of Biological Chemistry 278 (52), 52622-52628, 2003
1812003
Biodegradation of 1, 2, 3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene
T Bosma, J Damborský, G Stucki, DB Janssen
Applied and environmental microbiology 68 (7), 3582-3587, 2002
1772002
Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21 (DE3) carrying a synthetic metabolic pathway
P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek, M Sedlackova, ...
Microbial cell factories 14 (1), 1-15, 2015
1662015
Machine learning in enzyme engineering
S Mazurenko, Z Prokop, J Damborsky
ACS Catalysis 10 (2), 1210-1223, 2019
1632019
Haloalkane dehalogenases: biotechnological applications
T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ...
Biotechnology Journal 8 (1), 32-45, 2013
1592013
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ...
Bioinformatics 30 (18), 2684-2685, 2014
1542014
PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions
J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský
PLoS computational biology 12 (5), e1004962, 2016
1432016
Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel
T Koudelakova, R Chaloupkova, J Brezovsky, Z Prokop, E Sebestova, ...
Angewandte Chemie 125 (7), 2013-2017, 2013
1402013
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