Miten Jain
Miten Jain
Assistant Research Scientist, UC Santa Cruz Genomics Institute
Verified email at ucsc.edu - Homepage
Title
Cited by
Cited by
Year
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
10842018
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
M Jain, HE Olsen, B Paten, M Akeson
Genome biology 17 (1), 1-11, 2016
7982016
Improved data analysis for the MinION nanopore sequencer
M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson
Nature methods 12 (4), 351-356, 2015
5722015
Mapping DNA methylation with high-throughput nanopore sequencing
AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ...
Nature methods 14 (4), 411-413, 2017
2562017
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ...
F1000Research 4, 2015
2332015
Cancer vaccines and carbohydrate epitopes
J Heimburg-Molinaro, M Lum, G Vijay, M Jain, A Almogren, ...
Vaccine 29 (48), 8802-8826, 2011
2312011
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
A Byrne, AE Beaudin, HE Olsen, M Jain, C Cole, T Palmer, RM DuBois, ...
Nature communications 8 (1), 1-11, 2017
2232017
Nanopore native RNA sequencing of a human poly (A) transcriptome (vol 16, pg, 1297, 2019)
RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ...
NATURE METHODS 17 (1), 114-114, 2020
180*2020
Centromere reference models for human chromosomes X and Y satellite arrays
KH Miga, Y Newton, M Jain, N Altemose, HF Willard, WJ Kent
Genome research 24 (4), 697-707, 2014
1752014
Linear assembly of a human centromere on the Y chromosome
M Jain, HE Olsen, DJ Turner, D Stoddart, KV Bulazel, B Paten, D Haussler, ...
Nature biotechnology 36 (4), 321, 2018
1542018
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
122*2020
MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome
JR Tyson, NJ O'Neil, M Jain, HE Olsen, P Hieter, TP Snutch
Genome research 28 (2), 266-274, 2018
117*2018
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
AM Smith, M Jain, L Mulroney, DR Garalde, M Akeson
PloS one 14 (5), e0216709, 2019
912019
MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9. 0 chemistry
M Jain, JR Tyson, M Loose, CLC Ip, DA Eccles, J O'Grady, S Malla, ...
F1000Research 6, 2017
882017
CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma
SJ Liu, M Malatesta, BV Lien, P Saha, SS Thombare, SJ Hong, L Pedraza, ...
Genome biology 21 (1), 1-18, 2020
252020
Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing
N Ring, JS Abrahams, M Jain, H Olsen, A Preston, S Bagby
Microbial genomics 4 (11), 2018
172018
Off Earth identification of bacterial populations using 16S rDNA nanopore sequencing
AS Burton, SE Stahl, KK John, M Jain, S Juul, DJ Turner, ED Harrington, ...
Genes 11 (1), 76, 2020
142020
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
bioRxiv, 2021
112021
Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts
H Ding, AD Bailey IV, M Jain, H Olsen, B Paten
Bioinformatics 36 (19), 4928-4934, 2020
102020
precisionFDA Truth Challenge V2: Calling variants from short-and long-reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
Biorxiv, 2020.11. 13.380741, 2021
72021
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Articles 1–20