Anna Lobas
Anna Lobas
Staff Scientist, INEPCP RAS
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Proteome digestion specificity analysis for rational design of extended bottom-up and middle-down proteomics experiments
UA Laskay, AA Lobas, K Srzentić, MV Gorshkov, YO Tsybin
Journal of proteome research 12 (12), 5558-5569, 2013
IdentiPy: an extensible search engine for protein identification in shotgun proteomics
LI Levitsky, MV Ivanov, AA Lobas, JA Bubis, IA Tarasova, EM Solovyeva, ...
Journal of proteome research 17 (7), 2249-2255, 2018
Unbiased false discovery rate estimation for shotgun proteomics based on the target-decoy approach
LI Levitsky, MV Ivanov, AA Lobas, MV Gorshkov
Journal of proteome research 16 (2), 393-397, 2017
Empirical multidimensional space for scoring peptide spectrum matches in shotgun proteomics
MV Ivanov, LI Levitsky, AA Lobas, T Panic, UA Laskay, G Mitulovic, ...
Journal of proteome research 13 (4), 1911-1920, 2014
Multiplexed middle-down mass spectrometry as a method for revealing light and heavy chain connectivity in a monoclonal antibody
K Srzentić, KO Nagornov, L Fornelli, AA Lobas, D Ayoub, AN Kozhinov, ...
Analytical chemistry 90 (21), 12527-12535, 2018
Exome-driven characterization of the cancer cell lines at the proteome level: the NCI-60 case study
MA Karpova, DS Karpov, MV Ivanov, MA Pyatnitskiy, AL Chernobrovkin, ...
Journal of proteome research 13 (12), 5551-5560, 2014
DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes
MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, AA Lobas, ...
Analytical chemistry 92 (6), 4326-4333, 2020
Exome‐based proteogenomics of HEK‐293 human cell line: Coding genomic variants identified at the level of shotgun proteome
AA Lobas, DS Karpov, AT Kopylov, EM Solovyeva, MV Ivanov, IY Ilina, ...
Proteomics 16 (14), 1980-1991, 2016
Enhancing the Cytotoxic Activity of Anticancer PtIV Complexes by Introduction of Lonidamine as an Axial Ligand
YN Nosova, LS Foteeva, IV Zenin, TI Fetisov, KI Kirsanov, ...
European Journal of Inorganic Chemistry 2017 (12), 1785-1791, 2017
Human neuromodulator SLURP-1: bacterial expression, binding to muscle-type nicotinic acetylcholine receptor, secondary structure, and conformational heterogeneity in solution
MA Shulepko, EN Lyukmanova, AS Paramonov, AA Lobas, ZO Shenkarev, ...
Biochemistry (Moscow) 78, 204-211, 2013
Proteogenomics of malignant melanoma cell lines: the effect of stringency of exome data filtering on variant peptide identification in shotgun proteomics
AA Lobas, MA Pyatnitskiy, AL Chernobrovkin, IY Ilina, DS Karpov, ...
Journal of proteome research 17 (5), 1801-1811, 2018
Comparative proteomics as a tool for identifying specific alterations within interferon response pathways in human glioblastoma multiforme cells
IA Tarasova, AV Tereshkova, AA Lobas, EM Solovyeva, AS Sidorenko, ...
Oncotarget 9 (2), 1785, 2018
MS/MS-free protein identification in complex mixtures using multiple enzymes with complementary specificity
MV Ivanov, IA Tarasova, LI Levitsky, EM Solovyeva, ML Pridatchenko, ...
Journal of Proteome Research 16 (11), 3989-3999, 2017
FractionOptimizer: a method for optimal peptide fractionation in bottom-up proteomics
EM Solovyeva, AA Lobas, AT Kopylov, IY Ilina, LI Levitsky, ...
Analytical and bioanalytical chemistry 410, 3827-3833, 2018
Comparison of false discovery rate control strategies for variant peptide identifications in shotgun proteogenomics
MV Ivanov, AA Lobas, DS Karpov, SA Moshkovskii, MV Gorshkov
Journal of Proteome Research 16 (5), 1936-1943, 2017
Combination of Edman degradation of peptides with liquid chromatography/mass spectrometry workflow for peptide identification in bottom‐up proteomics
AA Lobas, AN Verenchikov, AA Goloborodko, LI Levitsky, MV Gorshkov
Rapid Communications in Mass Spectrometry 27 (3), 391-400, 2013
Depletion of human serum albumin in embryo culture media for in vitro fertilization using monolithic columns with immobilized antibodies
IA Tarasova, AA Lobas, U Černigoj, EM Solovyeva, B Mahlberg, ...
Electrophoresis 37 (17-18), 2322-2327, 2016
Chemical-mediated digestion: an alternative realm for middle-down proteomics?
K Srzentić, KO Zhurov, AA Lobas, G Nikitin, L Fornelli, MV Gorshkov, ...
Journal of proteome research 17 (6), 2005-2016, 2018
Validating amino acid variants in proteogenomics using sequence coverage by multiple reads
LI Levitsky, KG Kuznetsova, AA Kliuchnikova, IY Ilina, AO Goncharov, ...
Journal of Proteome Research 21 (6), 1438-1448, 2022
Semi-supervised quality control method for proteome analyses based on tandem mass spectrometry
EM Solovyeva, AA Lobas, AT Kopylov, MV Gorshkov
International Journal of Mass Spectrometry 427, 59-64, 2018
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