| STAR: ultrafast universal RNA-seq aligner A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ... Bioinformatics 29 (1), 15-21, 2013 | 41725 | 2013 |
| An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015 | 2468 | 2015 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1841 | 2021 |
| Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory MJ Chaisson, G Tesler BMC bioinformatics 13, 1-18, 2012 | 1253 | 2012 |
| Resolving the complexity of the human genome using single-molecule sequencing MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ... Nature 517 (7536), 608-611, 2015 | 866 | 2015 |
| Multi-platform discovery of haplotype-resolved structural variation in human genomes MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ... Nature communications 10 (1), 1784, 2019 | 801 | 2019 |
| Extensive sequencing of seven human genomes to characterize benchmark reference materials JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ... Scientific data 3 (1), 1-26, 2016 | 720 | 2016 |
| Short read fragment assembly of bacterial genomes MJ Chaisson, PA Pevzner Genome research 18 (2), 324-330, 2008 | 599 | 2008 |
| Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 511 | 2021 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 473 | 2023 |
| Genetic variation and the de novo assembly of human genomes MJP Chaisson, RK Wilson, EE Eichler Nature Reviews Genetics 16 (11), 627-640, 2015 | 421 | 2015 |
| Discovery and genotyping of structural variation from long-read haploid genome sequence data J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ... Genome research 27 (5), 677-685, 2017 | 408 | 2017 |
| De novo fragment assembly with short mate-paired reads: Does the read length matter? MJ Chaisson, D Brinza, PA Pevzner Genome research 19 (2), 336-346, 2009 | 388 | 2009 |
| High-resolution comparative analysis of great ape genomes ZN Kronenberg, IT Fiddes, D Gordon, S Murali, S Cantsilieris, ... Science 360 (6393), eaar6343, 2018 | 379 | 2018 |
| Long-read sequence assembly of the gorilla genome D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ... Science 352 (6281), aae0344, 2016 | 344 | 2016 |
| Assembly of long error-prone reads using de Bruijn graphs Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016 | 328 | 2016 |
| A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 309 | 2020 |
| The Human Pangenome Project: a global resource to map genomic diversity T Wang, L Antonacci-Fulton, K Howe, HA Lawson, JK Lucas, AM Phillippy, ... Nature 604 (7906), 437-446, 2022 | 304 | 2022 |
| Fragment assembly with short reads M Chaisson, P Pevzner, H Tang Bioinformatics 20 (13), 2067-2074, 2004 | 300 | 2004 |
| Reconstructing complex regions of genomes using long-read sequencing technology J Huddleston, S Ranade, M Malig, F Antonacci, M Chaisson, L Hon, ... Genome research 24 (4), 688-696, 2014 | 291 | 2014 |
