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Karpov Dmitry
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PPLine: an automated pipeline for SNP, SAP, and splice variant detection in the context of proteogenomics
GS Krasnov, AA Dmitriev, AV Kudryavtseva, AV Shargunov, DS Karpov, ...
Journal of proteome research 14 (9), 3729-3737, 2015
702015
Human aqueous humor proteome in cataract, glaucoma, and pseudoexfoliation syndrome
AA Kliuchnikova, NI Samokhina, IY Ilina, DS Karpov, MA Pyatnitskiy, ...
Proteomics 16 (13), 1938-1946, 2016
582016
Exome-driven characterization of the cancer cell lines at the proteome level: the NCI-60 case study
MA Karpova, DS Karpov, MV Ivanov, MA Pyatnitskiy, AL Chernobrovkin, ...
Journal of proteome research 13 (12), 5551-5560, 2014
392014
Proteasome inhibition enhances resistance to DNA damage via upregulation of Rpn4-dependent DNA repair genes
DS Karpov, DS Spasskaya, VV Tutyaeva, AS Mironov, VL Karpov
FEBS letters 587 (18), 3108-3114, 2013
342013
Expression of long non-coding RNA LINC00973 is consistently increased upon treatment of colon cancer cells with different chemotherapeutic drugs
OL Zinovieva, EN Grineva, MM Prokofjeva, DS Karpov, AO Zheltukhin, ...
Biochimie 151, 67-72, 2018
332018
Exome‐based proteogenomics of HEK‐293 human cell line: Coding genomic variants identified at the level of shotgun proteome
AA Lobas, DS Karpov, AT Kopylov, EM Solovyeva, MV Ivanov, IY Ilina, ...
Proteomics 16 (14), 1980-1991, 2016
332016
Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics
AL Chernobrovkin, AT Kopylov, VG Zgoda, AA Moysa, MA Pyatnitskiy, ...
Journal of proteomics 120, 169-178, 2015
322015
Mapping of yeast Rpn4p transactivation domains
KS Dmitry, VV Tutyaeva, VL Karpov
FEBS letters 582 (23-24), 3459-3464, 2008
222008
Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly
KG Kuznetsova, AA Kliuchnikova, IU Ilina, AL Chernobrovkin, ...
Journal of proteome research 17 (11), 3889-3903, 2018
212018
Bringing down cancer aircraft: searching for essential hypomutated proteins in skin melanoma
M Pyatnitskiy, D Karpov, E Poverennaya, A Lisitsa, S Moshkovskii
PLoS One 10 (11), e0142819, 2015
212015
Rpn4p is a positive and negative transcriptional regulator of the ubiquitin-proteasome system
DS Karpov, SA Osipov, OV Preobrazhenskaya, VL Karpov
Molecular Biology 42, 456-462, 2008
212008
Proteogenomics of malignant melanoma cell lines: the effect of stringency of exome data filtering on variant peptide identification in shotgun proteomics
AA Lobas, MA Pyatnitskiy, AL Chernobrovkin, IY Ilina, DS Karpov, ...
Journal of proteome research 17 (5), 1801-1811, 2018
202018
Adenosine‐to‐Inosine RNA Editing in Mouse and Human Brain Proteomes
LI Levitsky, AA Kliuchnikova, KG Kuznetsova, DS Karpov, MV Ivanov, ...
Proteomics 19 (23), 1900195, 2019
182019
A plasmid-expressed CRISPR/Cas9 system suppresses replication of HSV type I in a vero cell culture
DS Karpov, VL Karpov, RR Klimova, NA Demidova, AA Kushch
Molecular Biology 53 (1), 70-78, 2019
182019
Comparison of false discovery rate control strategies for variant peptide identifications in shotgun proteogenomics
MV Ivanov, AA Lobas, DS Karpov, SA Moshkovskii, MV Gorshkov
Journal of Proteome Research 16 (5), 1936-1943, 2017
172017
Age-dependent expression profiles of two adaptogenic systems and thermotolerance in Drosophila melanogaster
V Shilova, O Zatsepina, A Zakluta, D Karpov, L Chuvakova, D Garbuz, ...
Cell Stress and Chaperones 25, 305-315, 2020
152020
Cellular models in schizophrenia research
DA Abashkin, AO Kurishev, DS Karpov, VE Golimbet
International journal of molecular sciences 22 (16), 8518, 2021
142021
CRISPR/Cas9-Mediated Genome Engineering Reveals the Contribution of the 26S Proteasome to the Extremophilic Nature of the Yeast Debaryomyces hansenii
DS Spasskaya, MI Kotlov, DS Lekanov, VV Tutyaeva, AV Snezhkina, ...
ACS Synthetic Biology 10 (2), 297-308, 2021
142021
Treatment of cancer cells with chemotherapeutic drugs results in profound changes in expression of genes encoding aldehyde-metabolizing enzymes
OL Zinovieva, EN Grineva, GS Krasnov, DS Karpov, AO Zheltukhin, ...
Journal of Cancer 10 (18), 4256, 2019
132019
Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy
JA Bubis, DS Spasskaya, VA Gorshkov, F Kjeldsen, AM Kofanova, ...
Applied microbiology and biotechnology 104, 4027-4041, 2020
112020
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