David Páez-Espino

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Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Natalia IvanovaDOE Joint Genome InstituteVerified email at lbl.gov
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteVerified email at lbl.gov
Jennifer DoudnaProfessor of Molecular and Cell Biology and Chemistry, UC BerkeleyVerified email at berkeley.edu
Georgios A. PavlopoulosResearch Director (Bioinformatics Prof.), IFBR-BSRC Fleming & Managing Director Bioinnovation GreeceVerified email at fleming.gr
David (Dudu) BursteinTel Aviv UniversityVerified email at tau.ac.il
Simon RouxDOE Joint Genome InstituteVerified email at lbl.gov
Víctor de Lorenzo (ORCID 0000-0002-...Professor of Research of the CSICVerified email at cnb.csic.es
Edward M RubinScience CorpsVerified email at science-corps.org
Frederik SchulzDOE Joint Genome InstituteVerified email at lbl.gov
Rekha SeshadriU.S. Department of Energy JGIVerified email at lbl.gov
Gonzalo Durante-RodríguezStaff Researcher (CIB-CSIC)Verified email at cib.csic.es
Neha J VargheseDOE Joint Genome InstituteVerified email at lbl.gov
Max Chavarría (ORCID: 0000-0001-59...1. Chemistry School & CIPRONA, Universidad de Costa Rica 2. CENIBiotVerified email at ucr.ac.cr
Brian C. ThomasCEO/Founder, Metagenomi.coVerified email at metagenomi.co
Rodolphe BarrangouNorth Carolina State UniversityVerified email at ncsu.edu
Rafael Silva RochaFounder and CTO at ByMyCellVerified email at bymycell.com
Esteban Martínez-GarcíaPostdoctoral ReseacherVerified email at cnb.csic.es
Ricardo CavicchioliProfessor of Environmental Microbiology, UNSW SydneyVerified email at unsw.edu.au

David Páez-Espino

Ancilia Biosciences / Former: Mammoth Bio, JGI, UCB, CNB-CSIC

Verified email at anciliabio.com

microbiome virome CRISPR-Cas host-virus LBPs


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Uncovering Earth’s virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature 536 (7617), 425-430, 2016	976	2016
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes LB Harrington, D Burstein, JS Chen, D Paez-Espino, E Ma, IP Witte, ... Science 362 (6416), 839-842, 2018	883	2018
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ... Nucleic acids research 41 (D1), D666-D675, 2013	670	2013
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	562	2021
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018	473	2018
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	448	2019
Microbial responses to environmental arsenic D Páez-Espino, J Tamames, V de Lorenzo, D Cánovas Biometals 22, 117-130, 2009	422	2009
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v. 4) M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ... Standards in genomic sciences 10, 1-6, 2015	407	2015
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome S Nayfach, D Páez-Espino, L Call, SJ Low, H Sberro, NN Ivanova, ... Nature microbiology 6 (7), 960-970, 2021	280	2021
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 49 (D1), D764-D775, 2021	263	2021
Giant virus diversity and host interactions through global metagenomics F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ... Nature 578 (7795), 432-436, 2020	246	2020
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676-683, 2017	244	2017
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic acids research 45 (D1), gkw1030, 2016	211	2016
A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021	207	2021
A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020	204	2020
Strong bias in the bacterial CRISPR elements that confer immunity to phage D Paez-Espino, W Morovic, CL Sun, BC Thomas, K Ueda, B Stahl, ... Nature communications 4 (1), 1430, 2013	202	2013
A thermostable Cas9 with increased lifetime in human plasma LB Harrington, D Paez-Espino, BT Staahl, JS Chen, E Ma, NC Kyrpides, ... Nature communications 8 (1), 1424, 2017	195	2017
CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus D Paez-Espino, I Sharon, W Morovic, B Stahl, BC Thomas, R Barrangou, ... MBio 6 (2), 10.1128/mbio. 00262-15, 2015	171	2015
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 47 (D1), D678-D686, 2019	165	2019
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ... Nature communications 7 (1), 10476, 2016	159	2016

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