Mark V Ivanov
Mark V Ivanov
Institute for Energy Problems of Chemical Physics, Russian Academy of Sciences
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Pyteomics—a Python framework for exploratory data analysis and rapid software prototyping in proteomics
AA Goloborodko, LI Levitsky, MV Ivanov, MV Gorshkov
Journal of The American Society for Mass Spectrometry 24 (2), 301-304, 2013
Pyteomics 4.0: five years of development of a python proteomics framework
LI Levitsky, JA Klein, MV Ivanov, MV Gorshkov
Journal of proteome research 18 (2), 709-714, 2018
Breath analysis in real time by mass spectrometry in chronic obstructive pulmonary disease
P Martinez-Lozano Sinues, L Meier, C Berchtold, M Ivanov, N Sievi, ...
Respiration 87 (4), 301-310, 2014
Unbiased false discovery rate estimation for shotgun proteomics based on the target-decoy approach
LI Levitsky, MV Ivanov, AA Lobas, MV Gorshkov
Journal of proteome research 16 (2), 393-397, 2017
IdentiPy: an extensible search engine for protein identification in shotgun proteomics
LI Levitsky, MV Ivanov, AA Lobas, JA Bubis, IA Tarasova, EM Solovyeva, ...
Journal of proteome research 17 (7), 2249-2255, 2018
Comparative evaluation of label‐free quantification methods for shotgun proteomics
JA Bubis, LI Levitsky, MV Ivanov, IA Tarasova, MV Gorshkov
Rapid Communications in Mass Spectrometry 31 (7), 606-612, 2017
Empirical multidimensional space for scoring peptide spectrum matches in shotgun proteomics
MV Ivanov, LI Levitsky, AA Lobas, T Panic, UA Laskay, G Mitulovic, ...
Journal of proteome research 13 (4), 1911-1920, 2014
Scavager: a versatile postsearch validation algorithm for shotgun proteomics based on gradient boosting
MV Ivanov, LI Levitsky, JA Bubis, MV Gorshkov
Proteomics 19 (3), 1800280, 2019
Exome-driven characterization of the cancer cell lines at the proteome level: the NCI-60 case study
MA Karpova, DS Karpov, MV Ivanov, MA Pyatnitskiy, AL Chernobrovkin, ...
Journal of proteome research 13 (12), 5551-5560, 2014
DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes
MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, AA Lobas, ...
Analytical chemistry 92 (6), 4326-4333, 2020
Exome‐based proteogenomics of HEK‐293 human cell line: Coding genomic variants identified at the level of shotgun proteome
AA Lobas, DS Karpov, AT Kopylov, EM Solovyeva, MV Ivanov, IY Ilina, ...
Proteomics 16 (14), 1980-1991, 2016
Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics
AL Chernobrovkin, AT Kopylov, VG Zgoda, AA Moysa, MA Pyatnitskiy, ...
Journal of proteomics 120, 169-178, 2015
Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly
KG Kuznetsova, AA Kliuchnikova, IU Ilina, AL Chernobrovkin, ...
Journal of proteome research 17 (11), 3889-3903, 2018
Boosting MS1-only proteomics with machine learning allows 2000 protein identifications in single-shot human proteome analysis using 5 min HPLC gradient
MV Ivanov, JA Bubis, V Gorshkov, DA Abdrakhimov, F Kjeldsen, ...
Journal of proteome research 20 (4), 1864-1873, 2021
Proteogenomics of malignant melanoma cell lines: the effect of stringency of exome data filtering on variant peptide identification in shotgun proteomics
AA Lobas, MA Pyatnitskiy, AL Chernobrovkin, IY Ilina, DS Karpov, ...
Journal of proteome research 17 (5), 1801-1811, 2018
Adenosine‐to‐Inosine RNA Editing in Mouse and Human Brain Proteomes
LI Levitsky, AA Kliuchnikova, KG Kuznetsova, DS Karpov, MV Ivanov, ...
Proteomics 19 (23), 1900195, 2019
Comparative proteomics as a tool for identifying specific alterations within interferon response pathways in human glioblastoma multiforme cells
IA Tarasova, AV Tereshkova, AA Lobas, EM Solovyeva, AS Sidorenko, ...
Oncotarget 9 (2), 1785, 2018
MS/MS-free protein identification in complex mixtures using multiple enzymes with complementary specificity
MV Ivanov, IA Tarasova, LI Levitsky, EM Solovyeva, ML Pridatchenko, ...
Journal of Proteome Research 16 (11), 3989-3999, 2017
Comparison of false discovery rate control strategies for variant peptide identifications in shotgun proteogenomics
MV Ivanov, AA Lobas, DS Karpov, SA Moshkovskii, MV Gorshkov
Journal of Proteome Research 16 (5), 1936-1943, 2017
Identification of single amino acid substitutions in proteogenomics
SA Moshkovskii, MV Ivanov, KG Kuznetsova, MV Gorshkov
Biochemistry (Moscow) 83, 250-258, 2018
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