| Pyteomics—a Python framework for exploratory data analysis and rapid software prototyping in proteomics AA Goloborodko, LI Levitsky, MV Ivanov, MV Gorshkov Journal of The American Society for Mass Spectrometry 24 (2), 301-304, 2013 | 188 | 2013 |
| Pyteomics 4.0: five years of development of a python proteomics framework LI Levitsky, JA Klein, MV Ivanov, MV Gorshkov Journal of proteome research 18 (2), 709-714, 2018 | 148 | 2018 |
| Breath analysis in real time by mass spectrometry in chronic obstructive pulmonary disease P Martinez-Lozano Sinues, L Meier, C Berchtold, M Ivanov, N Sievi, ... Respiration 87 (4), 301-310, 2014 | 69 | 2014 |
| Unbiased false discovery rate estimation for shotgun proteomics based on the target-decoy approach LI Levitsky, MV Ivanov, AA Lobas, MV Gorshkov Journal of proteome research 16 (2), 393-397, 2017 | 68 | 2017 |
| IdentiPy: an extensible search engine for protein identification in shotgun proteomics LI Levitsky, MV Ivanov, AA Lobas, JA Bubis, IA Tarasova, EM Solovyeva, ... Journal of proteome research 17 (7), 2249-2255, 2018 | 67 | 2018 |
| Comparative evaluation of label‐free quantification methods for shotgun proteomics JA Bubis, LI Levitsky, MV Ivanov, IA Tarasova, MV Gorshkov Rapid Communications in Mass Spectrometry 31 (7), 606-612, 2017 | 66 | 2017 |
| Empirical multidimensional space for scoring peptide spectrum matches in shotgun proteomics MV Ivanov, LI Levitsky, AA Lobas, T Panic, UA Laskay, G Mitulovic, ... Journal of proteome research 13 (4), 1911-1920, 2014 | 57 | 2014 |
| Scavager: a versatile postsearch validation algorithm for shotgun proteomics based on gradient boosting MV Ivanov, LI Levitsky, JA Bubis, MV Gorshkov Proteomics 19 (3), 1800280, 2019 | 53 | 2019 |
| DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, AA Lobas, ... Analytical chemistry 92 (6), 4326-4333, 2020 | 47 | 2020 |
| Exome-driven characterization of the cancer cell lines at the proteome level: the NCI-60 case study MA Karpova, DS Karpov, MV Ivanov, MA Pyatnitskiy, AL Chernobrovkin, ... Journal of proteome research 13 (12), 5551-5560, 2014 | 41 | 2014 |
| Boosting MS1-only proteomics with machine learning allows 2000 protein identifications in single-shot human proteome analysis using 5 min HPLC gradient MV Ivanov, JA Bubis, V Gorshkov, DA Abdrakhimov, F Kjeldsen, ... Journal of proteome research 20 (4), 1864-1873, 2021 | 34 | 2021 |
| Exome‐based proteogenomics of HEK‐293 human cell line: Coding genomic variants identified at the level of shotgun proteome AA Lobas, DS Karpov, AT Kopylov, EM Solovyeva, MV Ivanov, IY Ilina, ... Proteomics 16 (14), 1980-1991, 2016 | 33 | 2016 |
| Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics AL Chernobrovkin, AT Kopylov, VG Zgoda, AA Moysa, MA Pyatnitskiy, ... Journal of proteomics 120, 169-178, 2015 | 32 | 2015 |
| Biosaur: An open‐source Python software for liquid chromatography–mass spectrometry peptide feature detection with ion mobility support DA Abdrakhimov, JA Bubis, V Gorshkov, F Kjeldsen, MV Gorshkov, ... Rapid Communications in Mass Spectrometry, e9045, 2021 | 24 | 2021 |
| MS/MS-free protein identification in complex mixtures using multiple enzymes with complementary specificity MV Ivanov, IA Tarasova, LI Levitsky, EM Solovyeva, ML Pridatchenko, ... Journal of Proteome Research 16 (11), 3989-3999, 2017 | 24 | 2017 |
| Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly KG Kuznetsova, AA Kliuchnikova, IU Ilina, AL Chernobrovkin, ... Journal of proteome research 17 (11), 3889-3903, 2018 | 22 | 2018 |
| Adenosine‐to‐Inosine RNA Editing in Mouse and Human Brain Proteomes LI Levitsky, AA Kliuchnikova, KG Kuznetsova, DS Karpov, MV Ivanov, ... Proteomics 19 (23), 1900195, 2019 | 21 | 2019 |
| DirectMS1Quant: Ultrafast Quantitative Proteomics with MS/MS-Free Mass Spectrometry MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, EM Solovyeva, ... Analytical chemistry 38 (94), 13068–13075, 2022 | 20 | 2022 |
| Proteogenomics of malignant melanoma cell lines: the effect of stringency of exome data filtering on variant peptide identification in shotgun proteomics AA Lobas, MA Pyatnitskiy, AL Chernobrovkin, IY Ilina, DS Karpov, ... Journal of proteome research 17 (5), 1801-1811, 2018 | 19 | 2018 |
| Comparative proteomics as a tool for identifying specific alterations within interferon response pathways in human glioblastoma multiforme cells IA Tarasova, AV Tereshkova, AA Lobas, EM Solovyeva, AS Sidorenko, ... Oncotarget 9 (2), 1785, 2018 | 19 | 2018 |
Mikhail GorshkovV.L. Talrose Institute for Energy Problems of Chemical PhysicsVerified email at chph.ras.ru
