Formation of chromosomal domains by loop extrusion G Fudenberg, M Imakaev, C Lu, A Goloborodko, N Abdennur, LA Mirny Cell reports 15 (9), 2038-2049, 2016 | 1915 | 2016 |
HiGlass: web-based visual exploration and analysis of genome interaction maps P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ... Genome biology 19, 1-12, 2018 | 1781 | 2018 |
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization EP Nora, A Goloborodko, AL Valton, JH Gibcus, A Uebersohn, ... Cell 169 (5), 930-944. e22, 2017 | 1662 | 2017 |
FTO Obesity Variant Circuitry and Adipocyte Browning in Humans M Claussnitzer, SN Dankel, KH Kim, G Quon, W Meuleman, C Haugen, ... New England Journal of Medicine 373 (10), 895-907, 2015 | 1516 | 2015 |
Cooler: scalable storage for Hi-C data and other genomically labeled arrays N Abdennur, LA Mirny Bioinformatics 36 (1), 311-316, 2020 | 1503 | 2020 |
Two independent modes of chromatin organization revealed by cohesin removal W Schwarzer, N Abdennur, A Goloborodko, A Pekowska, G Fudenberg, ... Nature 551 (7678), 51-56, 2017 | 1156 | 2017 |
Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition IM Flyamer, J Gassler, M Imakaev, HB Brandão, SV Ulianov, N Abdennur, ... Nature 544 (7648), 110-114, 2017 | 758 | 2017 |
Chromatin organization by an interplay of loop extrusion and compartmental segregation J Nuebler, G Fudenberg, M Imakaev, N Abdennur, L Mirny Biophysical Journal 114 (3), 30a, 2018 | 651 | 2018 |
Ultrastructural details of mammalian chromosome architecture N Krietenstein, S Abraham, SV Venev, N Abdennur, J Gibcus, THS Hsieh, ... Molecular cell 78 (3), 554-565. e7, 2020 | 506 | 2020 |
Emerging evidence of chromosome folding by loop extrusion G Fudenberg, N Abdennur, M Imakaev, A Goloborodko, LA Mirny Cold Spring Harbor symposia on quantitative biology 82, 45-55, 2017 | 304 | 2017 |
Two major mechanisms of chromosome organization LA Mirny, M Imakaev, N Abdennur Current opinion in cell biology 58, 142-152, 2019 | 206 | 2019 |
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data SB Reiff, AJ Schroeder, K Kırlı, A Cosolo, C Bakker, L Mercado, S Lee, ... Nature communications 13 (1), 2365, 2022 | 115 | 2022 |
Gene expression noise facilitates adaptation and drug resistance independently of mutation DA Charlebois, N Abdennur, M Kaern Physical review letters 107 (21), 218101, 2011 | 99 | 2011 |
Interaction of the N-and C-terminal autoregulatory domains of FRL2 does not inhibit FRL2 activity DC Vaillant, SJ Copeland, C Davis, SF Thurston, N Abdennur, ... Journal of Biological Chemistry 283 (48), 33750-33762, 2008 | 80 | 2008 |
Pairtools: from sequencing data to chromosome contacts Open2C, N Abdennur, G Fudenberg, IM Flyamer, AA Galitsyna, ... PLOS Computational Biology 20 (5), e1012164, 2024 | 70 | 2024 |
Cooltools: Enabling high-resolution Hi-C analysis in Python Open2C, N Abdennur, S Abraham, G Fudenberg, IM Flyamer, ... PLOS Computational Biology 20 (5), e1012067, 2024 | 70 | 2024 |
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers G Spracklin, N Abdennur, M Imakaev, N Chowdhury, S Pradhan, LA Mirny, ... Nature structural & molecular biology 30 (1), 38-51, 2023 | 69 | 2023 |
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos J Erceg, J AlHaj Abed, A Goloborodko, BR Lajoie, G Fudenberg, ... Nature communications 10 (1), 4486, 2019 | 58 | 2019 |
Formation of chromosomal domains by loop extrusion. Cell Rep 15: 2038–2049 G Fudenberg, M Imakaev, C Lu, A Goloborodko, N Abdennur, LA Mirny | 58 | 2016 |
H Haering C, Mirny L, Spitz F. 2017. Two independent modes of chromatin organization revealed by cohesin removal W Schwarzer, N Abdennur, A Goloborodko, A Pekowska, G Fudenberg, ... Nature 551 (7678), 51-56, 0 | 49 | |