| Epidemiological models of Mycobacterium tuberculosis complex infections C Ozcaglar, A Shabbeer, SL Vandenberg, B Yener, KP Bennett Mathematical biosciences 236 (2), 77-96, 2012 | 147 | 2012 |
| TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex A Shabbeer, LS Cowan, C Ozcaglar, N Rastogi, SL Vandenberg, B Yener, ... Infection, Genetics and Evolution 12 (4), 789-797, 2012 | 128 | 2012 |
| Web tools for molecular epidemiology of tuberculosis A Shabbeer, C Ozcaglar, B Yener, KP Bennett Infection, Genetics and Evolution 12 (4), 767-781, 2012 | 52 | 2012 |
| A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages M Aminian, A Shabbeer, KP Bennett Bmc Bioinformatics 11, 1-14, 2010 | 38 | 2010 |
| Online knowledge-based support vector machines G Kunapuli, KP Bennett, A Shabbeer, R Maclin, J Shavlik Machine Learning and Knowledge Discovery in Databases: European Conference …, 2010 | 37 | 2010 |
| Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors C Ozcaglar, A Shabbeer, S Vandenberg, B Yener, KP Bennett BMC genomics 12, 1-26, 2011 | 25 | 2011 |
| Determination of major lineages of Mycobacterium tuberculosis Complex using mycobacterial interspersed repetitive units M Aminian, A Shabbeer, KP Bennett 2009 IEEE International Conference on Bioinformatics and Biomedicine, 338-343, 2009 | 15 | 2009 |
| Predicting Mycobacterium tuberculosis Complex Clades Using Knowledge‐Based Bayesian Networks M Aminian, D Couvin, A Shabbeer, K Hadley, S Vandenberg, N Rastogi, ... BioMed research international 2014 (1), 398484, 2014 | 14 | 2014 |
| Optimal embedding of heterogeneous graph data with edge crossing constraints A Shabbeer, C Ozcaglar, M Gonzalez, KP Bennett Presented at NIPS Workshop on Challenges of Data Visualization, 1, 2010 | 11 | 2010 |
| Knowledge-based Bayesian network for the classification of Mycobacterium tuberculosis complex sublineages M Aminian, A Shabbeer, K Hadley, C Ozcaglar, S Vandenberg, ... Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 6 | 2011 |
| Visualization of tuberculosis patient and Mycobacterium tuberculosis complex genotype data via host-pathogen maps KP Bennett, C Ozcaglar, J Ranganathan, S Raghavan, J Katz, D Croft, ... 2011 IEEE International Conference on Bioinformatics and Biomedicine …, 2011 | 5 | 2011 |
| Crossing minimization within graph embeddings A Shabbeer, C Ozcaglar, KP Bennett arXiv preprint arXiv:1210.2041, 2012 | 4 | 2012 |
| Inferred spoligoforest topology unravels spatially bimodal distribution of mutations in the DR region C Ozcaglar, A Shabbeer, N Kurepina, N Rastogi, B Yener, KP Bennett IEEE Transactions on NanoBioscience 11 (3), 191-202, 2012 | 4 | 2012 |
| A clustering framework for Mycobacterium tuberculosis complex strains using multiple-biomarker tensors C Ozcaglar, A Shabbeer, S Vandenberg, B Yener, KP Bennett Department of Computer Science, Rensselaer Polytechnic Institute, Tech. Rep …, 2010 | 3 | 2010 |
| Data-driven insights into deletions of Mycobacterium tuberculosis complex chromosomal DR Region using spoligoforests C Ozcaglar, A Shabbeer, N Kurepina, B Yener, KP Bennett 2011 IEEE International Conference on Bioinformatics and Biomedicine, 75-82, 2011 | 2 | 2011 |
| Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensors C Ozcaglar, A Shabbeer, S Vandenberg, KP Bennett 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010 | 2 | 2010 |
| Nonconvex nonsmooth optimization for bioinformatics. A Shabbeer Rensselaer Polytechnic Institute, 2013 | 1 | 2013 |
| TB-vis: Visualizing TB patient-pathogen relationships KP Bennett, C Ozcaglar, J Ranganathan, S Raghavan, J Katz, D Croft, ... TUBERCULOSIS 93 (1), 112-113, 2013 | | 2013 |
| Preserving proximity relations and minimizing edge-crossings in high dimensional graph visualizations A Shabbeer, C Ozcaglar, B Yener, KP Bennett 2011 IEEE Symposium on Large Data Analysis and Visualization, 131-132, 2011 | | 2011 |
| Proximity Preservation and Crossing-Minimization for Graph Embedding A Shabbeer, KP Bennett | | |
