Follow
Nitin Baliga
Nitin Baliga
Professor
Verified email at systemsbiology.org
Title
Cited by
Cited by
Year
Cytoscape: a software environment for integrated models of biomolecular interaction networks
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
Genome research 13 (11), 2498-2504, 2003
417812003
Peroxiredoxins are conserved markers of circadian rhythms
RS Edgar, EW Green, Y Zhao, G Van Ooijen, M Olmedo, X Qin, Y Xu, ...
Nature 485 (7399), 459-464, 2012
9812012
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
9342000
Visualization of omics data for systems biology
N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ...
Nature methods 7 (Suppl 3), S56-S68, 2010
7302010
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7, 1-16, 2006
6712006
CTCF physically links cohesin to chromatin
ED Rubio, DJ Reiss, PL Welcsh, CM Disteche, GN Filippova, NS Baliga, ...
Proceedings of the National Academy of Sciences 105 (24), 8309-8314, 2008
6302008
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
3832004
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
3582007
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
DJ Reiss, NS Baliga, R Bonneau
BMC bioinformatics 7, 1-22, 2006
3192006
Catabolite Control Protein A (CcpA) Contributes to Virulence and Regulation of Sugar Metabolism in Streptococcus pneumoniae
R Iyer, NS Baliga, A Camilli
Journal of bacteriology 187 (24), 8340-8349, 2005
2362005
Adaptation of cells to new environments
AN Brooks, S Turkarslan, KD Beer, F Yin Lo, NS Baliga
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (5), 544-561, 2011
2232011
The DNA-binding network of Mycobacterium tuberculosis
KJ Minch, TR Rustad, EJR Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ...
Nature communications 6 (1), 5829, 2015
2172015
Use and abuse of correlation analyses in microbial ecology
A Carr, C Diener, NS Baliga, SM Gibbons
The ISME journal 13 (11), 2647-2655, 2019
2002019
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
PT Shannon, DJ Reiss, R Bonneau, NS Baliga
BMC bioinformatics 7, 1-13, 2006
1982006
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
CL Plaisier, M Pan, NS Baliga
Genome research 22 (11), 2302-2314, 2012
1972012
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
NS Baliga, SJ Bjork, R Bonneau, M Pan, C Iloanusi, MCH Kottemann, ...
Genome research 14 (6), 1025-1035, 2004
1872004
Genome-wide CRISPR-Cas9 screens reveal loss of redundancy between PKMYT1 and WEE1 in glioblastoma stem-like cells
CM Toledo, Y Ding, P Hoellerbauer, RJ Davis, R Basom, EJ Girard, E Lee, ...
Cell reports 13 (11), 2425-2439, 2015
1772015
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
NS Baliga, M Pan, YA Goo, EC Yi, DR Goodlett, K Dimitrov, P Shannon, ...
Proceedings of the National Academy of Sciences 99 (23), 14913-14918, 2002
1732002
Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana
J Ashworth, S Coesel, A Lee, EV Armbrust, MV Orellana, NS Baliga
Proceedings of the National Academy of Sciences 110 (18), 7518-7523, 2013
1552013
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
1532009
The system can't perform the operation now. Try again later.
Articles 1–20