| The nf-core framework for community-curated bioinformatics pipelines PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ... Nature biotechnology 38 (3), 276-278, 2020 | 1088 | 2020 |
| Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ... F1000Research 9, 2020 | 127 | 2020 |
| Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager JAF Yates, TC Lamnidis, M Borry, AA Valtueña, Z Fagernäs, S Clayton, ... PeerJ 9, e10947, 2021 | 64* | 2021 |
| Identification of new mechanisms of cellular response to chemotherapy by tracking changes in post-translational modifications by ubiquitin and ubiquitin-like proteins T Bonacci, S Audebert, L Camoin, E Baudelet, G Bidaut, M Garcia, ... Journal of proteome research 13 (5), 2478-2494, 2014 | 40 | 2014 |
| Interactome–transcriptome integration for predicting distant metastasis in breast cancer M Garcia, R Millat-Carus, F Bertucci, P Finetti, D Birnbaum, G Bidaut Bioinformatics 28 (5), 672-678, 2012 | 31 | 2012 |
| nf-core/viralrecon: nf-core/viralrecon v2. 5-Manganese Monkey H Patel, S Varona, S Monzón, J Espinosa-Carrasco, ML Heuer, NC Bot, ... Epub ahead of print 13, 2022 | 13 | 2022 |
| nf-core: Community curated bioinformatics pipelines. bioRxiv 610741 PA Ewels, A Peltzer, S Fillinger, J Alneberg, H Patel, A Wilm, MU Garcia, ... | 10 | 2019 |
| nf-core/rnaseq: nf-core/rnaseq version 1.4. 2 P Ewels, R Hammarén, A Peltzer, D Moreno, M Garcia, S Panneerselvam, ... Zenodo 2019Available online 10, 2019 | 9 | 2019 |
| Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery F Hanssen, MU Garcia, L Folkersen, AS Pedersen, F Lescai, S Jodoin, ... bioRxiv, 2023.07. 19.549462, 2023 | 8 | 2023 |
| Glycosylation controls sodium-calcium exchanger 3 sub-cellular localization during cell cycle T Liu, J Zhao, C Ibarra, MU Garcia, P Uhlén, M Nistér European Journal of Cell Biology 97 (3), 190-203, 2018 | 8 | 2018 |
| Sarek: a portable workflow for whole-genome sequencing analysis of germline and somatic variants. F1000Research 9 63 M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ... | 7 | 2020 |
| Linking Interactome to Disease: A Network-Based Analysis of Metastatic Relapse in Breast Cancer M Garcia, O Stahl, P Finetti, D Birnbaum, F Bertucci, G Bidaut Bioinformatics: Concepts, Methodologies, Tools, and Applications, 151, 2013 | 6 | 2013 |
| Linking Interactome to Disease: A Network-Based Analysis of Metastatic Relapse in Breast Cancer M Garcia, O Stahl, P Finetti, D Birnbaum, F Bertucci, G Bidaut Handbook of Research on Computational and Systems Biology: Interdisciplinary …, 2011 | 6 | 2011 |
| nf-core: community curated bioinformatics pipelines. BioRxiv. 2019; 610741 P Ewels, A Peltzer, S Fillinger, J Alneberg, H Patel, A Wilm, MU Garcia, ... Publisher Full Text, 0 | 5 | |
| Detection of Driver Protein Complexes in Breast Cancer Metastasis by Large-Scale Transcriptome–Interactome Integration M Garcia, P Finetti, F Bertucci, D Birnbaum, G Bidaut Gene Function Analysis, 67-85, 2014 | 4 | 2014 |
| The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden T Díaz de Ståhl, A Shamikh, M Mayrhofer, S Juhos, E Basmaci, ... Journal of Translational Medicine 21 (1), 342, 2023 | 3 | 2023 |
| nf-core: Community curated bioinformatics pipelines PA Ewels, A Peltzer, S Fillinger, J Alneberg, H Patel, A Wilm, MU Garcia, ... bioRxiv, 0 | 2 | |
| Cactus: a user-friendly and reproducible ATAC-Seq and mRNA-Seq analysis pipeline for data preprocessing, differential analysis, and enrichment analysis S Jérôme, L Millan-Ariño, M Garcia, CG Riedel bioRxiv, 2023.05. 11.540110, 2023 | | 2023 |
| Reproduce easily: analysis of matching tumor-normal NGS data with the Sarek workflow S Juhos, M Garcia, D Stahl, T Diaz, M Mayrhofer, J Sandgren, M Nister EUROPEAN JOURNAL OF HUMAN GENETICS 28 (SUPPL 1), 678-678, 2020 | | 2020 |
| Sarek: A portable workflow for whole-genome sequencin g analysis of germline and somatic variants [version 1; peer M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ... | | 2020 |
Phil EwelsSeqera LabsVerified email at seqera.io
