| Protein corona formed on silver nanoparticles in blood plasma is highly selective and resistant to physicochemical changes of the solution V Gorshkov, JA Bubis, EM Solovyeva, MV Gorshkov, F Kjeldsen Environmental Science: Nano 6 (4), 1089-1098, 2019 | 59 | 2019 |
| IdentiPy: an extensible search engine for protein identification in shotgun proteomics LI Levitsky, MV Ivanov, AA Lobas, JA Bubis, IA Tarasova, EM Solovyeva, ... Journal of proteome research 17 (7), 2249-2255, 2018 | 54 | 2018 |
| Comparative evaluation of label‐free quantification methods for shotgun proteomics JA Bubis, LI Levitsky, MV Ivanov, IA Tarasova, MV Gorshkov Rapid Communications in Mass Spectrometry 31 (7), 606-612, 2017 | 54 | 2017 |
| Scavager: a versatile postsearch validation algorithm for shotgun proteomics based on gradient boosting MV Ivanov, LI Levitsky, JA Bubis, MV Gorshkov Proteomics 19 (3), 1800280, 2019 | 47 | 2019 |
| DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, AA Lobas, ... Analytical chemistry 92 (6), 4326-4333, 2020 | 31 | 2020 |
| Comparative proteomics as a tool for identifying specific alterations within interferon response pathways in human glioblastoma multiforme cells IA Tarasova, AV Tereshkova, AA Lobas, EM Solovyeva, AS Sidorenko, ... Oncotarget 9 (2), 1785, 2018 | 19 | 2018 |
| MS/MS-free protein identification in complex mixtures using multiple enzymes with complementary specificity MV Ivanov, IA Tarasova, LI Levitsky, EM Solovyeva, ML Pridatchenko, ... Journal of Proteome Research 16 (11), 3989-3999, 2017 | 17 | 2017 |
| Boosting MS1-only proteomics with machine learning allows 2000 protein identifications in single-shot human proteome analysis using 5 min HPLC gradient MV Ivanov, JA Bubis, V Gorshkov, DA Abdrakhimov, F Kjeldsen, ... Journal of proteome research 20 (4), 1864-1873, 2021 | 14 | 2021 |
| Cysteine alkylation methods in shotgun proteomics and their possible effects on methionine residues KG Kuznetsova, LI Levitsky, MA Pyatnitskiy, IY Ilina, JA Bubis, ... Journal of proteomics 231, 104022, 2021 | 13 | 2021 |
| Biosaur: An open‐source Python software for liquid chromatography–mass spectrometry peptide feature detection with ion mobility support DA Abdrakhimov, JA Bubis, V Gorshkov, F Kjeldsen, MV Gorshkov, ... Rapid Communications in Mass Spectrometry, e9045, 2021 | 12 | 2021 |
| Multi-omics analysis of glioblastoma cells’ sensitivity to oncolytic viruses AV Lipatova, AV Soboleva, VA Gorshkov, JA Bubis, EM Solovyeva, ... Cancers 13 (21), 5268, 2021 | 11 | 2021 |
| Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy JA Bubis, DS Spasskaya, VA Gorshkov, F Kjeldsen, AM Kofanova, ... Applied microbiology and biotechnology 104, 4027-4041, 2020 | 11 | 2020 |
| Validation of peptide identification results in proteomics using amino acid counting JA Bubis, LI Levitsky, MV Ivanov, MV Gorshkov Proteomics 18 (23), 1800117, 2018 | 9 | 2018 |
| PhosphoShield: Improving Trypsin Digestion of Phosphoproteins by Shielding the Negatively Charged Phosphate Moiety JA Bubis, V Gorshkov, MV Gorshkov, F Kjeldsen Journal of the American Society for Mass Spectrometry 31 (10), 2053-2060, 2020 | 5 | 2020 |
| Proteomics‐based scoring of cellular response to stimuli for improved characterization of signaling pathway activity EM Kazakova, EM Solovyeva, LI Levitsky, JA Bubis, DD Emekeeva, ... Proteomics 23 (5), 2200275, 2023 | 3 | 2023 |
| DirectMS1Quant: ultrafast quantitative proteomics with MS/MS-free mass spectrometry MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, EM Solovyeva, ... Analytical chemistry 94 (38), 13068-13075, 2022 | 3 | 2022 |
| A comprehensive evaluation of consensus spectrum generation methods in proteomics X Luo, W Bittremieux, J Griss, EW Deutsch, T Sachsenberg, LI Levitsky, ... Journal of proteome research 21 (6), 1566-1574, 2022 | 2 | 2022 |
| AA_stat: Intelligent profiling of in vivo and in vitro modifications from open search results LI Levitsky, JA Bubis, MV Gorshkov, IA Tarasova Journal of Proteomics 248, 104350, 2021 | 2 | 2021 |
| Massive proteogenomic reanalysis of publicly available proteomic datasets of human tissues in search for protein recoding via adenosine-to-inosine RNA editing LI Levitsky, MV Ivanov, AO Goncharov, AA Kliuchnikova, JA Bubis, ... Journal of proteome research, 2023 | 1 | 2023 |
| IQMMA: an efficient MS1 intensity extraction using multiple feature detection algorithms for DDA proteomics VI Postoenko, LA Garibova, LI Levitsky, JA Bubis, MV Gorshkov, ... bioRxiv, 2023.02. 03.526776, 2023 | 1 | 2023 |
Mikhail GorshkovV.L. Talrose Institute for Energy Problems of Chemical PhysicsVerified email at chph.ras.ru
