| Protein corona formed on silver nanoparticles in blood plasma is highly selective and resistant to physicochemical changes of the solution V Gorshkov, JA Bubis, EM Solovyeva, MV Gorshkov, F Kjeldsen Environmental Science: Nano 6 (4), 1089-1098, 2019 | 68 | 2019 |
| IdentiPy: an extensible search engine for protein identification in shotgun proteomics LI Levitsky, MV Ivanov, AA Lobas, JA Bubis, IA Tarasova, EM Solovyeva, ... Journal of proteome research 17 (7), 2249-2255, 2018 | 63 | 2018 |
| Comparative evaluation of label‐free quantification methods for shotgun proteomics JA Bubis, LI Levitsky, MV Ivanov, IA Tarasova, MV Gorshkov Rapid Communications in Mass Spectrometry 31 (7), 606-612, 2017 | 63 | 2017 |
| Scavager: a versatile postsearch validation algorithm for shotgun proteomics based on gradient boosting MV Ivanov, LI Levitsky, JA Bubis, MV Gorshkov Proteomics 19 (3), 1800280, 2019 | 51 | 2019 |
| DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, AA Lobas, ... Analytical chemistry 92 (6), 4326-4333, 2020 | 39 | 2020 |
| Boosting MS1-only proteomics with machine learning allows 2000 protein identifications in single-shot human proteome analysis using 5 min HPLC gradient MV Ivanov, JA Bubis, V Gorshkov, DA Abdrakhimov, F Kjeldsen, ... Journal of proteome research 20 (4), 1864-1873, 2021 | 26 | 2021 |
| MS/MS-free protein identification in complex mixtures using multiple enzymes with complementary specificity MV Ivanov, IA Tarasova, LI Levitsky, EM Solovyeva, ML Pridatchenko, ... Journal of Proteome Research 16 (11), 3989-3999, 2017 | 21 | 2017 |
| Biosaur: An open‐source Python software for liquid chromatography–mass spectrometry peptide feature detection with ion mobility support DA Abdrakhimov, JA Bubis, V Gorshkov, F Kjeldsen, MV Gorshkov, ... Rapid Communications in Mass Spectrometry, e9045, 2021 | 19 | 2021 |
| Comparative proteomics as a tool for identifying specific alterations within interferon response pathways in human glioblastoma multiforme cells IA Tarasova, AV Tereshkova, AA Lobas, EM Solovyeva, AS Sidorenko, ... Oncotarget 9 (2), 1785, 2018 | 19 | 2018 |
| Multi-omics analysis of glioblastoma cells’ sensitivity to oncolytic viruses AV Lipatova, AV Soboleva, VA Gorshkov, JA Bubis, EM Solovyeva, ... Cancers 13 (21), 5268, 2021 | 17 | 2021 |
| Cysteine alkylation methods in shotgun proteomics and their possible effects on methionine residues KG Kuznetsova, LI Levitsky, MA Pyatnitskiy, IY Ilina, JA Bubis, ... Journal of proteomics 231, 104022, 2021 | 17 | 2021 |
| DirectMS1Quant: ultrafast quantitative proteomics with MS/MS-free mass spectrometry MV Ivanov, JA Bubis, V Gorshkov, IA Tarasova, LI Levitsky, EM Solovyeva, ... Analytical Chemistry 94 (38), 13068-13075, 2022 | 15 | 2022 |
| Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy JA Bubis, DS Spasskaya, VA Gorshkov, F Kjeldsen, AM Kofanova, ... Applied microbiology and biotechnology 104, 4027-4041, 2020 | 12 | 2020 |
| Proteomics‐based scoring of cellular response to stimuli for improved characterization of signaling pathway activity EM Kazakova, EM Solovyeva, LI Levitsky, JA Bubis, DD Emekeeva, ... Proteomics 23 (5), 2200275, 2023 | 10 | 2023 |
| Validation of peptide identification results in proteomics using amino acid counting JA Bubis, LI Levitsky, MV Ivanov, MV Gorshkov Proteomics 18 (23), 1800117, 2018 | 10 | 2018 |
| Massive proteogenomic reanalysis of publicly available proteomic datasets of human tissues in search for protein recoding via adenosine-to-inosine RNA editing LI Levitsky, MV Ivanov, AO Goncharov, AA Kliuchnikova, JA Bubis, ... Journal of Proteome Research 22 (6), 1695-1711, 2023 | 6 | 2023 |
| PhosphoShield: improving trypsin digestion of phosphoproteins by shielding the negatively charged phosphate moiety JA Bubis, V Gorshkov, MV Gorshkov, F Kjeldsen Journal of the American Society for Mass Spectrometry 31 (10), 2053-2060, 2020 | 6 | 2020 |
| Challenging the Astral™ mass analyzer - up to 5300 proteins per single-cell at unseen quantitative accuracy to study cellular heterogeneity JA Bubis, TN Arrey, E Damoc, B Delanghe, J Slovakova, TM Sommer, ... bioRxiv, 2024.02. 01.578358, 2024 | 3 | 2024 |
| On the feasibility of using an ultra-fast DirectMS1 method of proteome-wide analysis for searching drug targets in chemical proteomics EM Solovyeva, JA Bubis, IA Tarasova, AA Lobas, MV Ivanov, AA Nazarov, ... Biochemistry (Moscow) 87 (11), 1342-1353, 2022 | 3 | 2022 |
| Yeast ribonucleotide reductase is a direct target of the proteasome and provides hyper resistance to the carcinogen 4-NQO DS Spasskaya, KA Kulagin, EN Grineva, PJ Osipova, SV Poddubko, ... Journal of Fungi 9 (3), 351, 2023 | 2 | 2023 |
Mikhail GorshkovV.L. Talrose Institute for Energy Problems of Chemical PhysicsVerified email at chph.ras.ru
