| Individual brain organoids reproducibly form cell diversity of the human cerebral cortex S Velasco, AJ Kedaigle, SK Simmons, A Nash, M Rocha, G Quadrato, ... Nature 570 (7762), 523-527, 2019 | 735 | 2019 |
| Systematic comparison of single-cell and single-nucleus RNA-sequencing methods J Ding, X Adiconis, SK Simmons, MS Kowalczyk, CC Hession, ... Nature biotechnology 38 (6), 737-746, 2020 | 600 | 2020 |
| Single-cell transcriptomic profiling of the aging mouse brain M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ... Nature neuroscience 22 (10), 1696-1708, 2019 | 485 | 2019 |
| Autism genes converge on asynchronous development of shared neuron classes B Paulsen, S Velasco, AJ Kedaigle, M Pigoni, G Quadrato, AJ Deo, ... Nature 602 (7896), 268-273, 2022 | 207 | 2022 |
| In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes X Jin, SK Simmons, A Guo, AS Shetty, M Ko, L Nguyen, V Jokhi, ... Science 370 (6520), eaaz6063, 2020 | 205 | 2020 |
| Distinct subnetworks of the thalamic reticular nucleus Y Li, VG Lopez-Huerta, X Adiconis, K Levandowski, S Choi, SK Simmons, ... Nature 583 (7818), 819-824, 2020 | 121 | 2020 |
| Comprehensive comparative analysis of 5′-end RNA-sequencing methods X Adiconis, AL Haber, SK Simmons, A Levy Moonshine, Z Ji, MA Busby, ... Nature methods 15 (7), 505-511, 2018 | 105 | 2018 |
| Enabling privacy-preserving GWASs in heterogeneous human populations S Simmons, C Sahinalp, B Berger Cell systems 3 (1), 54-61, 2016 | 94 | 2016 |
| Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons H Tekin, S Simmons, B Cummings, L Gao, X Adiconis, CC Hession, ... Nature Biomedical Engineering 2 (7), 540-554, 2018 | 90 | 2018 |
| Realizing privacy preserving genome-wide association studies S Simmons, B Berger Bioinformatics 32 (9), 1293-1300, 2016 | 84 | 2016 |
| Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection CJ Ye, J Chen, AC Villani, RE Gate, M Subramaniam, T Bhangale, ... Genome research 28 (12), 1812-1825, 2018 | 64 | 2018 |
| Algebraic Cryptanalysis of Simplified AES∗ S Simmons Cryptologia 33 (4), 305-314, 2009 | 35 | 2009 |
| Privacy-preserving biomedical database queries with optimal privacy-utility trade-offs H Cho, S Simmons, R Kim, B Berger Cell systems 10 (5), 408-416. e9, 2020 | 24 | 2020 |
| Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing SK Simmons, G Lithwick-Yanai, X Adiconis, F Oberstrass, N Iremadze, ... Nature Biotechnology 41 (2), 204-211, 2023 | 20 | 2023 |
| Avoidable binary patterns in partial words F Blanchet-Sadri, R Mercaş, S Simmons, E Weissenstein Acta Informatica 48 (1), 25-41, 2011 | 20 | 2011 |
| Differential excitatory vs inhibitory SCN expression at single cell level regulates brain sodium channel function in neurodevelopmental disorders J Du, S Simmons, A Brunklaus, X Adiconis, CC Hession, Z Fu, Y Li, ... European Journal of Paediatric Neurology 24, 129-133, 2020 | 19 | 2020 |
| Protecting genomic data privacy with probabilistic modeling S Simmons, B Berger, C Sahinalp BIOCOMPUTING 2019: Proceedings of the Pacific Symposium, 403-414, 2018 | 17 | 2018 |
| Abelian square-free partial words F Blanchet-Sadri, JI Kim, R Mercaş, W Severa, S Simmons International Conference on Language and Automata Theory and Applications …, 2010 | 16 | 2010 |
| Abelian periods, partial words, and an extension of a theorem of Fine and Wilf F Blanchet-Sadri, S Simmons, A Tebbe, A Veprauskas RAIRO-Theoretical Informatics and Applications-Informatique Théorique et …, 2013 | 15 | 2013 |
| One size doesn't fit all: Measuring individual privacy in aggregate genomic data S Simmons, B Berger 2015 IEEE Security and Privacy Workshops, 41-49, 2015 | 14 | 2015 |
Joshua Z. LevinBroad Institute of MIT & HarvardVerified email at broadinstitute.org
