| MODOMICS: a database of RNA modification pathways. 2017 update P Boccaletto, MA Machnicka, E Purta, P Piątkowski, B Bagiński, ... Nucleic acids research 46 (D1), D303-D307, 2018 | 1794 | 2018 |
| MODOMICS: a database of RNA modification pathways—2013 update MA Machnicka, K Milanowska, O Osman Oglou, E Purta, M Kurkowska, ... Nucleic acids research 41 (D1), D262-D267, 2012 | 1120 | 2012 |
| RNAcentral: a comprehensive database of non-coding RNA sequences Nucleic acids research 45 (D1), D128-D134, 2017 | 206 | 2017 |
| Distribution and frequencies of post-transcriptional modifications in tRNAs MA Machnicka, A Olchowik, H Grosjean, JM Bujnicki RNA biology 11 (12), 1619-1629, 2014 | 196 | 2014 |
| Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas K Stępniak, MA Machnicka, J Mieczkowski, A Macioszek, B Wojtaś, ... Nature Communications 12 (1), 1-17, 2021 | 35 | 2021 |
| Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes MA Machnicka, KH Kaminska, S Dunin-Horkawicz, JM Bujnicki BMC bioinformatics 16 (1), 1-16, 2015 | 33 | 2015 |
| tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs MA Machnicka, S Dunin-Horkawicz, V de Crécy-Lagard, JM Bujnicki Methods 107, 34-41, 2016 | 13 | 2016 |
| RNApathwaysDB—a database of RNA maturation and decay pathways K Milanowska, K Mikolajczak, A Lukasik, M Skorupski, Z Balcer, ... Nucleic acids research 41 (D1), D268-D272, 2012 | 13 | 2012 |
| Careful feature selection is key in classification of Alzheimer’s disease patients based on whole-genome sequencing data M Osipowicz, B Wilczynski, MA Machnicka, ... NAR Genomics and Bioinformatics 3 (3), lqab069, 2021 | 11 | 2021 |
| Petri net–based model of the human DNA base excision repair pathway M Radom, MA Machnicka, J Krwawicz, JM Bujnicki, P Formanowicz PloS one 14 (9), e0217913, 2019 | 3 | 2019 |
| MODOMICS: a database of RNA modification pathways: SW01. S2–59 J Bujnicki, M Machnicka, K Milanowska, O Oglou, E Purta, P Piatkowski, ... The Febs Journal 280 (1), 2013 | 3 | 2013 |
| Machine learning and deep learning for the advancement of epigenomics MA Machnicka, B Wilczynski Epigenetics of the Immune System, 217-237, 2020 | 1 | 2020 |
| Analysis of transcription factor motifs discovered in glioma grade-specific enhancers M Jardanowska, MA Mozolewska, MA Machnicka, A Dziedzic, ... FEBS OPEN BIO 9, 207-207, 2019 | | 2019 |
| Sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes: WED-422 M Machnicka, K Kaminska, S Dunin-Horkawicz, J Bujnicki The Febs Journal 281, 2014 | | 2014 |
