Ian Fiddes
Ian Fiddes
Inscripta
Verified email at inscripta.com
Title
Cited by
Cited by
Year
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
10632018
GENCODE reference annotation for the human and mouse genomes
A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ...
Nucleic acids research 47 (D1), D766-D773, 2019
10172019
Improved data analysis for the MinION nanopore sequencer
M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson
Nature methods 12 (4), 351-356, 2015
5712015
The UCSC genome browser database: 2018 update
J Casper, AS Zweig, C Villarreal, C Tyner, ML Speir, KR Rosenbloom, ...
Nucleic acids research 46 (D1), D762-D769, 2018
4032018
Comprehensive molecular characterization of pheochromocytoma and paraganglioma
L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ...
Cancer cell 31 (2), 181-193, 2017
3342017
Long-read sequence assembly of the gorilla genome
D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ...
Science 352 (6281), 2016
2802016
Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ...
Cell 173 (6), 1356-1369. e22, 2018
2302018
High-resolution comparative analysis of great ape genomes
ZN Kronenberg, IT Fiddes, D Gordon, S Murali, S Cantsilieris, ...
Science 360 (6393), 2018
1972018
Establishing cerebral organoids as models of human-specific brain evolution
AA Pollen, A Bhaduri, MG Andrews, TJ Nowakowski, OS Meyerson, ...
Cell 176 (4), 743-756. e17, 2019
1822019
Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification
S Reischauer, OA Stone, A Villasenor, N Chi, SW Jin, M Martin, MT Lee, ...
Nature 535 (7611), 294-298, 2016
1022016
XactMice: humanizing mouse bone marrow enables microenvironment reconstitution in a patient-derived xenograft model of head and neck cancer
JJ Morton, G Bird, SB Keysar, DP Astling, TR Lyons, RT Anderson, ...
Oncogene 35 (3), 290, 2016
942016
Resolving the full spectrum of human genome variation using Linked-Reads
P Marks, S Garcia, AM Barrio, K Belhocine, J Bernate, R Bharadwaj, ...
Genome research 29 (4), 635-645, 2019
902019
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ...
Nature genetics 50 (11), 1574-1583, 2018
872018
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
642020
Improved reference genome for the domestic horse increases assembly contiguity and composition
TS Kalbfleisch, ES Rice, MS DePriest, BP Walenz, MS Hestand, ...
Communications biology 1 (1), 1-8, 2018
642018
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
D Thybert, M Roller, FCP Navarro, I Fiddes, I Streeter, C Feig, ...
Genome research 28 (4), 448-459, 2018
532018
A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing
AA Petti, SR Williams, CA Miller, IT Fiddes, SN Srivatsan, DY Chen, ...
Nature communications 10 (1), 1-16, 2019
522019
Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing
JM Replogle, TM Norman, A Xu, JA Hussmann, J Chen, JZ Cogan, ...
Nature biotechnology 38 (8), 954-961, 2020
492020
A robust benchmark for germline structural variant detection
JM Zook, NF Hansen, ND Olson, LM Chapman, JC Mullikin, C Xiao, ...
BioRxiv, 664623, 2019
382019
Whole-genome alignment and comparative annotation
J Armstrong, IT Fiddes, M Diekhans, B Paten
Annual review of animal biosciences 7, 41-64, 2019
362019
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Articles 1–20