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Jean-Philippe Fortin
Jean-Philippe Fortin
Scientist, gRED, Genentech
Подтвержден адрес электронной почты в домене gene.com
Название
Процитировано
Процитировано
Год
Harmonization of cortical thickness measurements across scanners and sites
JP Fortin, N Cullen, YI Sheline, WD Taylor, I Aselcioglu, PA Cook, ...
NeuroImage 167, 104-120, 2018
9112018
Harmonization of multi-site diffusion tensor imaging data
JP Fortin, D Parker, B Tunç, T Watanabe, MA Elliott, K Ruparel, DR Roalf, ...
Neuroimage 161, 149-170, 2017
8472017
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 503, 2014
8212014
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
JP Fortin, TJ Triche Jr, KD Hansen
Bioinformatics 33 (4), 558-560, 2017
6682017
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
JP Fortin, KD Hansen
Genome biology 16, 1-23, 2015
3122015
Removing inter-subject technical variability in magnetic resonance imaging studies
JP Fortin, EM Sweeney, J Muschelli, CM Crainiceanu, RT Shinohara, ...
NeuroImage 132, 198-212, 2016
1272016
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ...
Genome Biology 17 (1), 266, 2016
1232016
Integrated digital pathology and transcriptome analysis identifies molecular mediators of T-cell exclusion in ovarian cancer
M Desbois, AR Udyavar, L Ryner, C Kozlowski, Y Guan, M Dürrbaum, ...
Nature communications 11 (1), 5583, 2020
1172020
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
JP Fortin, E Fertig, K Hansen
F1000Research 3, 2014
1092014
Neuroconductor: an R platform for medical imaging analysis
J Muschelli, A Gherman, JP Fortin, B Avants, B Whitcher, JD Clayden, ...
Biostatistics 20 (2), 218-239, 2019
512019
Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens
JP Fortin, J Tan, KE Gascoigne, PM Haverty, WF Forrest, MR Costa, ...
Genome biology 20, 1-25, 2019
352019
funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types
K Oros Klein, S Grinek, S Bernatsky, L Bouchard, A Ciampi, I Colmegna, ...
Bioinformatics 32 (4), 593-595, 2016
232016
A saturation mutagenesis screen uncovers resistant and sensitizing secondary KRAS mutations to clinical KRASG12C inhibitors
S Feng, MG Callow, JP Fortin, Z Khan, D Bray, M Costa, Z Shi, W Wang, ...
Proceedings of the National Academy of Sciences 119 (18), e2120512119, 2022
142022
A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies
L Hoberecht, P Perampalam, A Lun, JP Fortin
Nature Communications 13 (1), 6568, 2022
132022
The Genome-Wide Molecular Landscape of HPV-Driven and HPV-Negative Head and Neck Squamous Cell Carcinoma
F Faraji, AD Schubert, LT Kagohara, M Tan, Y Xu, M Zaidi, JP Fortin, ...
Molecular Determinants of Head and Neck Cancer, 293-325, 2018
62018
Anti-α-synuclein c-terminal antibodies block PFF uptake and accumulation of phospho-synuclein in preclinical models of Parkinson's disease
R Brendza, X Gao, KL Stark, H Lin, SH Lee, C Hu, H Cai, D DiCara, ...
Neurobiology of Disease 177, 105969, 2023
52023
Asymptotic eigenvalue distribution of random lifts
JP Fortin, S Rudinsky
The Waterloo Mathematics Review 2 (2), 1-10, 2012
42012
Compartmap enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq
BK Johnson, JP Fortin, KD Hansen, H Shen, T Triche Jr
bioRxiv, 2021.05. 17.444465, 2021
12021
Minfi tutorial BioC2014
JPFKD Hansen
12014
Statistical methods for epigenetic data and structural magnetic resonance imaging
JP Fortin
Johns Hopkins University, 2016
2016
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Статьи 1–20