Erik Garrison
Erik Garrison
Подтвержден адрес электронной почты в домене
A map of human genome variation from population-scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56-65, 2012
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68-74, 2015
Haplotype-based variant detection from short-read sequencing
E Garrison, G Marth
arXiv preprint arXiv:1207.3907, 2012
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
Demographic history and rare allele sharing among human populations
S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ...
Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011
BamTools: a C++ API and toolkit for analyzing and managing BAM files
DW Barnett, EK Garrison, AR Quinlan, MP Strömberg, GT Marth
Bioinformatics 27 (12), 1691-1692, 2011
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 2013
MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping
WP Lee, MP Stromberg, A Ward, C Stewart, EP Garrison, GT Marth
PloS one 9 (3), e90581, 2014
A comprehensive map of mobile element insertion polymorphisms in humans
C Stewart, D Kural, MP Strömberg, JA Walker, MK Konkel, AM Stütz, ...
PLoS Genet 7 (8), e1002236, 2011
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini, GA McVean, P Donnelly, G Lunter, JL Marchini, ...
Nature communications 5, 3934, 2014
SpeedSeq: ultra-fast personal genome analysis and interpretation
C Chiang, RM Layer, GG Faust, MR Lindberg, DB Rose, EP Garrison, ...
Nature methods 12 (10), 966, 2015
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
GD Poznik, Y Xue, FL Mendez, TF Willems, A Massaia, MAW Sayres, ...
Nature genetics 48 (6), 593-599, 2016
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
M Zhao, WP Lee, EP Garrison, GT Marth
PloS one 8 (12), e82138, 2013
Genome graphs and the evolution of genome inference
B Paten, AM Novak, JM Eizenga, E Garrison
Genome research 27 (5), 665-676, 2017
A global reference for human genetic variation
GP Consortium, A Auton, LD Brooks, RM Durbin, EP Garrison, HM Kang
Nature 526 (7571), 68-74, 2015
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences
V Colonna, Q Ayub, Y Chen, L Pagani, P Luisi, M Pybus, E Garrison, ...
Genome biology 15 (6), 1-14, 2014
A graph extension of the positional Burrows–Wheeler transform and its applications
AM Novak, E Garrison, B Paten
Algorithms for Molecular Biology 12 (1), 18, 2017
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