Follow
David Kainer
David Kainer
Staff Scientist, Computational and Predictive Biology, Oak Ridge National Laboratory
Verified email at ornl.gov
Title
Cited by
Cited by
Year
Selecting optimal partitioning schemes for phylogenomic datasets
R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis
BMC evolutionary biology 14, 1-14, 2014
5992014
Plant-Derived Terpenes: A Feedstock for Specialty Biofuels
R Mewalal, DK Rai, D Kainer, F Chen, C Külheim, GF Peter, GA Tuskan
Trends in Biotechnology 35 (3), 227-240, 2017
1432017
Accelerating climate resilient plant breeding by applying next-generation artificial intelligence
AL Harfouche, DA Jacobson, D Kainer, JC Romero, AH Harfouche, ...
Trends in biotechnology 37 (11), 1217-1235, 2019
1252019
The effects of partitioning on phylogenetic inference
D Kainer, R Lanfear
Molecular biology and evolution 32 (6), 1611-1627, 2015
1042015
MinIONQC: fast and simple quality control for MinION sequencing data
R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger
Bioinformatics 35 (3), 523-525, 2019
982019
Multi‐trait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits
HB Chhetri, DM Sanz, D Kainer, AK Biswal, LM Evans, JG Chen, ...
New Phytologist, 2019
682019
Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models
MR Garvin, ET Prates, M Pavicic, P Jones, BK Amos, A Geiger, MB Shah, ...
Genome Biology 21 (1), 1-26, 2020
552020
Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
M Schalamun, R Nagar, D Kainer, E Beavan, D Eccles, JP Rathjen, ...
Molecular ecology resources 19 (1), 77-89, 2019
462019
Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
W Wang, M Schalamun, A Morales-Suarez, D Kainer, B Schwessinger, ...
BMC genomics 19, 1-15, 2018
422018
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction
W Joubert, D Weighill, D Kainer, S Climer, A Justice, K Fagnan, ...
SC18: International Conference for High Performance Computing, Networking …, 2018
402018
The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
W Wang, A Das, D Kainer, M Schalamun, A Morales-Suarez, ...
GigaScience 9 (1), giz160, 2020
342020
Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals?
J Streich, J Romero, JGFM Gazolla, D Kainer, A Cliff, ET Prates, JB Brown, ...
Current Opinion in Biotechnology 61, 217-225, 2020
312020
A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant
AJ Orr, A Padovan, D Kainer, C Külheim, L Bromham, C Bustos-Segura, ...
Proceedings of the Royal Society B 287 (1922), 20192364, 2020
292020
High Throughput Screening Technologies in Biomass Characterization
SR Decker, AE Harman-Ware, RM Happs, EJ Wolfrum, GA Tuskan, ...
Frontiers in Energy Research 6, 120, 2018
292018
Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea
D Kainer, EA Stone, A Padovan, WJ Foley, C Külheim
G3: Genes, Genomes, Genetics 8 (8), 2573-2583, 2018
282018
A High-Performance Computing Implementation of Iterative Random Forest for the Creation of Predictive Expression Networks
A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson
Genes 10 (12), 996, 2019
272019
Genomic approaches to selection in outcrossing perennials: focus on essential oil crops
D Kainer, R Lanfear, WJ Foley, C Külheim
Theoretical and applied genetics 128, 2351-2365, 2015
252015
High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus
D Kainer, A Padovan, J Degenhardt, S Krause, P Mondal, WJ Foley, ...
New Phytologist, 2019
242019
Transcriptome analysis of terpene chemotypes of Melaleuca alternifolia across different tissues
C Bustos‐Segura, A Padovan, D Kainer, WJ Foley, C Külheim
Plant, cell & environment 40 (10), 2406-2425, 2017
152017
A genome-wide association study of suicide attempts in the million veterans program identifies evidence of pan-ancestry and ancestry-specific risk loci
NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ...
Molecular psychiatry 27 (4), 2264-2272, 2022
142022
The system can't perform the operation now. Try again later.
Articles 1–20