Daniel Valenzuela
Daniel Valenzuela
Postdoctoral researcher, University of Helsinki
Подтвержден адрес электронной почты в домене cs.helsinki.fi - Главная страница
Название
Процитировано
Процитировано
Год
Computational pan-genomics: status, promises and challenges
Computational Pan-Genomics Consortium
Briefings in Bioinformatics, bbw089, 2016
1352016
Improved compressed indexes for full-text document retrieval
D Belazzougui, G Navarro, D Valenzuela
Journal of Discrete Algorithms 18, 3-13, 2013
532013
Practical compressed document retrieval
G Navarro, SJ Puglisi, D Valenzuela
International Symposium on Experimental Algorithms, 193-205, 2011
402011
Space-efficient top-k document retrieval
G Navarro, D Valenzuela
International Symposium on Experimental Algorithms, 307-319, 2012
292012
General document retrieval in compact space
G Navarro, SJ Puglisi, D Valenzuela
Journal of Experimental Algorithmics (JEA) 19, 2.3, 2015
242015
Towards pan-genome read alignment to improve variation calling
D Valenzuela, T Norri, N Välimäki, E Pitkänen, V Mäkinen
BMC Genomics 19 (2), 87, 2018
122018
Compressed spaced suffix arrays
T Gagie, G Manzini, D Valenzuela
Mathematics in Computer Science 11 (2), 151-157, 2017
112017
CHICO: A compressed hybrid index for repetitive collections
D Valenzuela
International Symposium on Experimental Algorithms, 326-338, 2016
92016
Recombination-aware alignment of diploid individuals
V Mäkinen, D Valenzuela
BMC genomics 15 (6), S15, 2014
62014
Analyzing Relative Lempel-Ziv Reference Construction
T Gagie, SJ Puglisi, D Valenzuela
International Symposium on String Processing and Information Retrieval, 160-165, 2016
42016
Interval scheduling maximizing minimum coverage
V Mäkinen, V Staneva, AI Tomescu, D Valenzuela, S Wilzbach
Discrete Applied Mathematics, 2017
32017
CHIC: a short read aligner for pan-genomic references
D Valenzuela, V Mäkinen
bioRxiv, 178129, 2017
32017
Compressed Suffix Array.
D Belazzougui, V Mäkinen, D Valenzuela
Encyclopedia of Algorithms, 386-390, 2016
32016
Lempel–Ziv-like Parsing in Small Space
D Kosolobov, D Valenzuela, G Navarro, SJ Puglisi
arXiv, arXiv: 1903.01909, 2019
2*2019
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics
R Rizzi, M Cairo, V Makinen, AI Tomescu, D Valenzuela
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018
2*2018
Diploid Alignments and Haplotyping
V Mäkinen, D Valenzuela
International Symposium on Bioinformatics Research and Applications, 235-246, 2015
22015
Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era
D Valenzuela
Ph. D. Dissertation. University of Helsinki, Finland, 2017
12017
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