Alexey Sergushichev
Alexey Sergushichev
ITMO University
Verified email at itmo.ru
TitleCited byYear
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 10, 2013
5472013
Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization
AK Jha, SCC Huang, A Sergushichev, V Lampropoulou, Y Ivanova, ...
Immunity 42 (3), 419-430, 2015
5182015
Itaconate links inhibition of succinate dehydrogenase with macrophage metabolic remodeling and regulation of inflammation
V Lampropoulou, A Sergushichev, M Bambouskova, S Nair, EE Vincent, ...
Cell metabolism 24 (1), 158-166, 2016
2602016
TREM2 maintains microglial metabolic fitness in Alzheimer’s disease
TK Ulland, WM Song, SCC Huang, JD Ulrich, A Sergushichev, WL Beatty, ...
Cell 170 (4), 649-663. e13, 2017
1952017
An algorithm for fast preranked gene set enrichment analysis using cumulative statistic calculation
A Sergushichev
BioRxiv, 060012, 2016
1392016
Mitochondrial phosphoenolpyruvate carboxykinase regulates metabolic adaptation and enables glucose-independent tumor growth
EE Vincent, A Sergushichev, T Griss, MC Gingras, B Samborska, ...
Molecular cell 60 (2), 195-207, 2015
1042015
Electrophilic properties of itaconate and derivatives regulate the IκBζ–ATF3 inflammatory axis
M Bambouskova, L Gorvel, V Lampropoulou, A Sergushichev, ...
Nature 556 (7702), 501, 2018
802018
Homeostatic control of innate lung inflammation by Vici syndrome gene Epg5 and additional autophagy genes promotes influenza pathogenesis
Q Lu, CC Yokoyama, JW Williams, MT Baldridge, X Jin, B DesRochers, ...
Cell host & microbe 19 (1), 102-113, 2016
542016
Targeted next-generation sequencing (NGS) of nine candidate genes with custom AmpliSeq in patients and a cardiomyopathy risk group
AS Glotov, SV Kazakov, EA Zhukova, AV Alexandrov, OS Glotov, ...
Clinica Chimica Acta 446, 132-140, 2015
312015
GAM: a web-service for integrated transcriptional and metabolic network analysis
AA Sergushichev, AA Loboda, AK Jha, EE Vincent, EM Driggers, ...
Nucleic acids research 44 (W1), W194-W200, 2016
302016
Integrating immunometabolism and macrophage diversity
MN Artyomov, A Sergushichev, JD Schilling
Seminars in immunology 28 (5), 417-424, 2016
292016
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience 2: 10
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
doi 10.1186/2047-217X-2-10, 2013
292013
The miR-1792 microRNA Cluster Is a Global Regulator of Tumor Metabolism
S Izreig, B Samborska, RM Johnson, A Sergushichev, EH Ma, C Lussier, ...
Cell reports 16 (7), 1915-1928, 2016
282016
End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data
A Derr, C Yang, R Zilionis, A Sergushichev, DM Blodgett, S Redick, ...
Genome research 26 (10), 1397-1410, 2016
242016
Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes
NC Howard, ND Marin, M Ahmed, BA Rosa, J Martin, M Bambouskova, ...
Nature microbiology 3 (10), 1099, 2018
172018
De novo mutations in FLNC leading to early‐onset restrictive cardiomyopathy and congenital myopathy
A Kiselev, R Vaz, A Knyazeva, A Khudiakov, S Tarnovskaya, J Liu, ...
Human mutation 39 (9), 1161-1172, 2018
102018
Метод сборки контигов геномных последовательностей на основе совместного применения графов де Брюина и графов перекрытий
АВ Александров, СВ Казаков, СВ Мельников, АА Сергушичев, ...
Научно-технический вестник информационных технологий, механики и оптики, 2012
102012
Solving generalized maximum-weight connected subgraph problem for network enrichment analysis
AA Loboda, MN Artyomov, AA Sergushichev
International Workshop on Algorithms in Bioinformatics, 210-221, 2016
92016
Genetic algorithm for induction of finite automata with continuous and discrete output actions
A Alexandrov, A Sergushichev, S Kazakov, F Tsarev
Proceedings of the 13th annual conference companion on Genetic and …, 2011
92011
The use of evolutionary programming based on training examples for the generation of finite state machines for controlling objects with complex behavior
AV Aleksandrov, SV Kazakov, AA Sergushichev, FN Tsarev, AA Shalyto
Journal of Computer and Systems Sciences International 52 (3), 410-425, 2013
82013
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Articles 1–20