Follow
Bonnie Dougherty
Bonnie Dougherty
Principal Computational Biologist
Verified email at pathos.com
Title
Cited by
Cited by
Year
Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions
EM Blais, KD Rawls, BV Dougherty, ZI Li, GL Kolling, P Ye, A Wallqvist, ...
Nature communications 8 (1), 14250, 2017
1632017
Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
ML Jenior, TJ Moutinho Jr, BV Dougherty, JA Papin
PLoS computational biology 16 (4), e1007099, 2020
502020
A simplified metabolic network reconstruction to promote understanding and development of flux balance analysis tools
KD Rawls, BV Dougherty, EM Blais, E Stancliffe, GL Kolling, K Vinnakota, ...
Computers in Biology and Medicine 105, 64-71, 2019
262019
Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort
BD Leibowitz, BV Dougherty, JSK Bell, J Kapilivsky, J Michuda, ...
BMC cancer 22 (1), 587, 2022
242022
Miniaturized plate readers for low-cost, high-throughput phenotypic screening
PA Jensen, BV Dougherty, TJ Moutinho Jr, JA Papin
Journal of laboratory automation 20 (1), 51-55, 2015
202015
Identifying functional metabolic shifts in heart failure with the integration of omics data and a heart-specific, genome-scale model
BV Dougherty, KD Rawls, GL Kolling, KC Vinnakota, A Wallqvist, ...
Cell Reports 34 (10), 2021
172021
Genome-scale characterization of toxicity-induced metabolic alterations in primary hepatocytes
KD Rawls, EM Blais, BV Dougherty, KC Vinnakota, VR Pannala, ...
Toxicological Sciences 172 (2), 279-291, 2019
172019
Metabolomics as a truly translational tool for precision medicine
JC Schmidt, BV Dougherty, RD Beger, DP Jones, MA Schmidt, WB Mattes
International journal of toxicology 40 (5), 413-426, 2021
142021
Predicting changes in renal metabolism after compound exposure with a genome-scale metabolic model
KD Rawls, BV Dougherty, KC Vinnakota, VR Pannala, A Wallqvist, ...
Toxicology and applied pharmacology 412, 115390, 2021
102021
Accelerating the Drug Development Pipeline with Genome‐Scale Metabolic Network Reconstructions
BV Dougherty, TJ Moutinho Jr, J Papin
Systems Biology 6, 139-162, 2017
102017
Systems biology approaches help to facilitate interpretation of cross-species comparisons
BV Dougherty, JA Papin
Current Opinion in Toxicology 23, 74-79, 2020
62020
Method suction device and related method thereof
JP Riordan, BV Dougherty, RM Foley, J Kanwal, AM Guendel
US Patent 9,993,585, 2018
62018
Metabolic network reconstructions to predict drug targets and off-target effects
K Rawls, BV Dougherty, J Papin
Metabolic Flux Analysis in Eukaryotic Cells: Methods and Protocols, 315-330, 2020
32020
Temporal concordance rates of pathogenic variants in liquid biopsies taken after solid tissue NGS profiling in a real-world pan-cancer cohort
M MacKay, J Drews, BV Dougherty, D Hassane, C Mason, G Khullar, ...
Cancer Research 82 (12_Supplement), 62-62, 2022
12022
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism
BV Dougherty, CJ Moore, KD Rawls, ML Jenior, B Chun, S Nagdas, ...
PLOS Computational Biology 20 (2), e1011919, 2024
2024
Systems and Methods for Detecting Cellular Pathway Dysregulation in Cancer Specimens
J Drews, B Dougherty, L Langer, C Igartua, AJ Sedgwick, J Guinney
US Patent App. 18/176,476, 2023
2023
Identifying metabolic adaptations during cardiotoxicity using paired transcriptomics and metabolomics data integrated with a model of heart metabolism
BV Dougherty, KD Rawls, ML Jenior, B Chun, S Nagdas, JJ Saucerman, ...
bioRxiv, 2021.10. 31.466544, 2021
2021
Optical density system and related method thereof
JA Papin, BV Dougherty, AM Geldert, KP Seitter
US Patent 10,907,122, 2021
2021
Genome-Scale Characterization of Toxicity-Induced Metabolic Alterations in Primary
KD Rawls, EM Blais, BV Dougherty, KC Vinnakota, VR Pannala, ...
Nat Biotechnol 34 (5), 525-527, 2019
2019
The system can't perform the operation now. Try again later.
Articles 1–19