Dongbo Bu
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The Genomes of Oryza sativa: A History of Duplications
J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ...
PLoS biology 3 (2), e38, 2005
Topological structure analysis of the protein–protein interaction network in budding yeast
D Bu, Y Zhao, L Cai, H Xue, X Zhu, H Lu, J Zhang, S Sun, L Ling, N Zhang, ...
Nucleic acids research 31 (9), 2443-2450, 2003
NONCODE: an integrated knowledge database of non-coding RNAs
C Liu, B Bai, G SkogerbÝ, L Cai, W Deng, Y Zhang, D Bu, Y Zhao, R Chen
Nucleic acids research 33 (suppl_1), D112-D115, 2005
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression
W Deng, X Zhu, G SkogerbÝ, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, ...
Genome research 16 (1), 20-29, 2006
Fragment‐HMM: A new approach to protein structure prediction
SC Li, D Bu, J Xu, M Li
Protein Science 17 (11), 1925-1934, 2008
The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast
H Lu, X Zhu, H Liu, G SkogerbÝ, J Zhang, Y Zhang, L Cai, Y Zhao, S Sun, ...
Nucleic acids research 32 (16), 4804-4811, 2004
Protein threading using residue co-variation and deep learning
J Zhu, S Wang, D Bu, J Xu
Bioinformatics 34 (13), i263-i273, 2018
MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control
Y Zhao, S He, C Liu, S Ru, H Zhao, Z Yang, P Yang, X Yuan, S Sun, D Bu, ...
Trends in Genetics 24 (7), 323-327, 2008
FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space
X Chen, SM He, D Bu, F Zhang, Z Wang, R Chen, W Gao
Bioinformatics 24 (18), 1994-2001, 2008
Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm
S Sun, Y Zhao, Y Jiao, Y Yin, L Cai, Y Zhang, H Lu, R Chen, D Bu
FEBS letters 580 (7), 1891-1896, 2006
Research and implementation of text categorization system based on VSM
J Pang, D Bu, S Bai
Application Research of Computers 18 (9), 23-26, 2001
FALCON@ home: a high-throughput protein structure prediction server based on remote homologue recognition
C Wang, H Zhang, WM Zheng, D Xu, J Zhu, B Wang, K Ning, S Sun, SC Li, ...
Bioinformatics 32 (3), 462-464, 2016
Principle of granularity in clustering and classification
DB Bu, S Bai, GJ Li
Improving consensus contact prediction via server correlation reduction
X Gao, D Bu, J Xu, M Li
BMC structural biology 9 (1), 1-14, 2009
Research and implementation of text categorization system based on VSM
P Jianfeng, B Dongbo, B Shuo
Application Research of Computers 9 (9), 23-26, 2001
Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra
S Sun, C Yu, Y Qiao, Y Lin, G Dong, C Liu, J Zhang, Z Zhang, J Cai, ...
Journal of proteome research 7 (01), 202-208, 2008
Date of origin of the SARS coronavirus strains
H Lu, Y Zhao, J Zhang, Y Wang, W Li, X Zhu, S Sun, J Xu, L Ling, L Cai, ...
BMC Infectious Diseases 4 (1), 1-6, 2004
MS-Simulator: Predicting Y-Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions
S Sun, F Yang, Q Yang, H Zhang, Y Wang, D Bu, B Ma
Journal of proteome research 11 (9), 4509-4516, 2012
Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts
J Zhu, H Zhang, SC Li, C Wang, L Kong, S Sun, WM Zheng, D Bu
Bioinformatics 33 (23), 3749-3757, 2017
Improving residue–residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
H Zhang, Y Gao, M Deng, C Wang, J Zhu, SC Li, WM Zheng, D Bu
Biochemical and biophysical research communications 472 (1), 217-222, 2016
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